rs217538788 SNP Detail

Summary

• ID
  rs217538788
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:58664331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATTATCT TGTTTTGCAT
  ATTGGAAAGG TTCATTGCAT TTGGATCAAT CAAGGGAACA GCCAGGGTCT CCCTTGGTTT
  ATTGAAAAAG CAATCTTCCA GAACATTCTT TCCCCTAGTT TACAATTGGT CACCACAGCC
  TGCTCTGCCA GGTGTCGTAC TATGCCAGGC TGTGGACTCA GTCACAGAAA GCACCTGCCT
  Y
  CCTGGAAGAC TAGAATCTGA TAGAAATCTC TAACCTGAAG AGCCTTTAGC TCATCATCTT
  CTGGGGTCAG CCGTTTGGAG GGAACCGCTG CTAAGAAGCA ATATTCTCGA GGGAGCTAGA
  CGTCCGTGAG CAGTGTCTTG TACCGACCGC TCTCCAGGCA CACCTTACAA TAGTGCCCGA
  CAGTTGACGA AACAGCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss402923818	MGP_WTSI_19_58750389	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217538788					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss402923818	MGP_WTSI_19_58750389	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:58664331 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11111	CpG island 11111	68 bp proximal
Pnlip	pancreatic lipase	within coordinates
Rr361109	regulatory region 361109	731 bp distal
Rr365894	regulatory region 365894	1070 bp proximal
Tssr157271	transcription start site region 157271	834 bp downstream
Tssr157272	transcription start site region 157272	818 bp downstream
Tssr157273	transcription start site region 157273	299 bp upstream
Tssr157274	transcription start site region 157274	331 bp upstream
Tssr157275	transcription start site region 157275	351 bp upstream
Tssr157276	transcription start site region 157276	374 bp upstream
Tssr157277	transcription start site region 157277	615 bp upstream
Tssr157278	transcription start site region 157278	1237 bp upstream
Tssr157279	transcription start site region 157279	1254 bp upstream
Tssr157280	transcription start site region 157280	1270 bp upstream
Tssr159961	transcription start site region 159961	729 bp upstream