rs217539370 SNP Detail

Summary

• ID
  rs217539370
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7553556 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggtctttgt cttaaaaaat aggtcatacc
  ttaaaagctc taaattggca atttttaaag ttggtagatc atggatttat ttcatatttc
  ctgaattatg tatcagaata actccatagt acatgagaac atattttcta cataAGCGGA
  K
  GCATGAAATT TTCAAATTGT TTAGGCAAAT GACTGTACAT TTGTGTTCAC CATTTCTCCT
  TTTAAAAGTT TTGAAAATAA AAATAGAATG TTCACATTAT GAAATCCCTC TGAATGTCTA
  CATTTAGGTT TTAAAACAAT ATAAACACTG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321734086	CHEV_6_7503556	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217539370					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7553556 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17147	CpG island 17147	1239 bp proximal
Rr146475	regulatory region 146475	1244 bp proximal
Tac1	tachykinin 1	1505 bp upstream
Tssr54885	transcription start site region 54885	1497 bp upstream