rs217548303 SNP Detail

Summary

• ID
  rs217548303
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91053824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATGCTGG ATTTCAATGT
  AATGTTGTGA GTAACCCTTG GACATTTTAT GTCTTCCTCG TAAGGCACAG TGCCTTGCTT
  AGCAATTGTT TTGTCATGCC TTTTCGTGTC TTGAAGTGGA CACATTTATT TATTCATGTA
  TTTTTACAAA TAACAAAAAA TAAAAACGTC TGTTAAAAAA AAAATCCCGT GCTTAAGTTT
  R
  TTTTATATAT CTCAATATTT TATTCTTCCA TCGTATTGAA GGTGTCAGGA ATGCTTAAGA
  AACCATGTTT CCTGCAGCAA CAGCTACTAG CTGGAGTCTC CCTTGTTTTT GTCAAGAAGG
  CACACTTGAT GCCTTTCAAA GTCTCTGCAG GATTTTTCTG TCAGAGAATC CCTCTCTAAC
  ATATTCTTTC CCCCAAGGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365847547	MGP_WTSI_5_91334991	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217548303					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365847547	MGP_WTSI_5_91334991	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91053824 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	27 bp downstream
Tssr47227	transcription start site region 47227	1891 bp downstream
Tssr47228	transcription start site region 47228	1828 bp downstream
Tssr47229	transcription start site region 47229	1807 bp downstream
Tssr47230	transcription start site region 47230	1782 bp downstream
Tssr47231	transcription start site region 47231	1752 bp downstream
Tssr47232	transcription start site region 47232	1605 bp downstream
Tssr47233	transcription start site region 47233	1555 bp downstream
Tssr47234	transcription start site region 47234	1520 bp downstream
Tssr47235	transcription start site region 47235	762 bp downstream
Tssr47236	transcription start site region 47236	723 bp downstream
Tssr47237	transcription start site region 47237	703 bp downstream
Tssr47238	transcription start site region 47238	644 bp downstream
Tssr47239	transcription start site region 47239	639 bp downstream
Tssr47240	transcription start site region 47240	620 bp downstream
Tssr47241	transcription start site region 47241	591 bp downstream
Tssr47242	transcription start site region 47242	566 bp downstream
Tssr47243	transcription start site region 47243	548 bp downstream
Tssr47244	transcription start site region 47244	509 bp downstream
Tssr47245	transcription start site region 47245	492 bp downstream
Tssr47246	transcription start site region 47246	438 bp downstream
Tssr47247	transcription start site region 47247	384 bp downstream
Tssr47248	transcription start site region 47248	325 bp downstream
Tssr47249	transcription start site region 47249	264 bp downstream
Tssr47250	transcription start site region 47250	126 bp downstream
Tssr47251	transcription start site region 47251	61 bp downstream
Tssr47252	transcription start site region 47252	9 bp downstream
Tssr51812	transcription start site region 51812	1738 bp upstream
Tssr51813	transcription start site region 51813	1721 bp upstream
Tssr51814	transcription start site region 51814	747 bp upstream
Tssr51815	transcription start site region 51815	701 bp upstream
Tssr51816	transcription start site region 51816	668 bp upstream