rs217552690 SNP Detail

Summary

• ID
  rs217552690
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:23735674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCAGGTA CTACTAGCTT
  CAATCAATTT TAAATGTCGT TCTTTAAATG TTAATTCTTT CATTCATCCA TTCACTTTAC
  ATACTTATAA CCATTTACAC ATCCTCCTCT CCTACTCCTT TCCTATTTTC CCCTCTTTCC
  CATCCACTAT TCCTTCCTTC TTCAGAAAAA AAGGAGCCCT ACACCCCCTT CCCCCAGATA
  W
  CTACATGCTT TGGCATACCA TGTTGCTCAA TAACTAGGCA CAGATTGGTG TTCTCTTTCA
  GAGGTCATGA AAGGCAGCCC AGAAGGGATA AAGTATCCCA GAGAAAGCAA TAGAGTAAGA
  AATAGTACCT GGTATTGCTC TTAGGAGTCC CACATAAAGA CCAGGTAAAT GTGTAAATGT
  ACCATATTCT CTGTATCCAT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	CAST/EiJ
ss397836705	MGP_WTSI_17_23653667	EVA_MGPV3	EVA_MGPV3	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	CAST/EiJ
rs217552690					SNP	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397836705	MGP_WTSI_17_23653667	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:23735674 () rs orientation: forward

Symbol	Name	Function Class
Gm7898	predicted gene 7898	916 bp downstream
Rr329666	regulatory region 329666	874 bp distal