rs217554890 SNP Detail

Summary

• ID
  rs217554890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:141154277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTTTTCT CACTCTGTGT
  ATGTCTGTCT TTATTCCCAA AGATGCATAC TCACAAAACC CAAATACTTA TACAACCCAT
  TAACTACTTT GTTGTGCAGA ACAGATAATC TCGAAAAAAA TTAACCACAA AATCCTATTT
  TTCTGCTGTT AACCAAGTAG TATTTGTTCC AGCTACTCAG GCACATTCTT GAGAATAGAA
  R
  ATAGCTACTG TCTAAGACTG CCGTGGATTC TAGCTTGTTT CTAATCTCCT TAGTTCTCTT
  TCTTTACTTT TCCATCCATG AAACACATGA TCTGGAAGGA CCCACATAGA CTGCCTCAAA
  GCAGGTTGTA AATAAGTCTT TTCTGTAGTG TATGTAGTTT AGCCAATCAT GGCAACTGTG
  TTCAATATGC AAAACCCACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320992227	CHEV_3_141111480	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217554890					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141154277 () rs orientation: forward

Symbol	Name	Function Class
Gm66152	predicted gene, 66152	within coordinates
Tssr32030	transcription start site region 32030	679 bp upstream