rs217560023 SNP Detail

Summary

• ID
  rs217560023
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:90694972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCTCAGGCA GCACTTTATT ACCTGTGTTC
  TGAAGAATTC TCGTCTTAAG TGATGATCCA GGAGACGAGC ACTTCTGCTG CTGGAAGGGT
  GCTGCACACT ACATTCTTTC TAGGTTGGTT CTAGCCCATG TTCATGTTCT AAAGATCCTG
  R
  AAAGTCTTGC ATTAAAAAGA TTGCTTAAAT ACCTGTAGTC TATCATTTCT GGTAATATTT
  TTTCCCAATA TCACTTTTTT TTTTTTGGTG TGTGCTAAGC AGATGTTATA TAACTTAACC
  TGACAACACT GAATTGGGTA AAGCTGTTAA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323796875	CHEV_11_90665460	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217560023					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:90694972 () rs orientation: forward

Symbol	Name	Function Class
4930405D11Rik	RIKEN cDNA 4930405D11 gene	546 bp upstream
Rr237710	regulatory region 237710	629 bp proximal
Rr253892	regulatory region 253892	948 bp distal
Tssr104130	transcription start site region 104130	536 bp upstream