rs217565874 SNP Detail

Summary

• ID
  rs217565874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165481192 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATAAATCT AAACAAACAT
  CAAAAACCCC AGGAGAATGA TGCAGTGGAA TTATGGGAGA GAATAACTGG GGGGTGGGAG
  CAGATTCCTT TGCCTGAGAT GTCACAAGGC AGGCTTTAGG GAAGAGGTCG CTGTCACCTG
  AGACCTGAAG GATAGGCTGG ATGGAAGTAG TCACAGGAGA ATCAGAAAGA AGAGCGTTCT
  Y
  ACTGGGAGGG GCTGGAAAGG CAGGAAGCTC TGAGTGAGGA AGGAATCTGG TGTGTTGCAG
  GAAGCAGACA GCAGATGGCC AGAGCCCAGC TCCGGGGAGG GCCAGGGAAG AGAGTGTGTG
  TCCTTCACCA AGATCTTATT TGAAAAGCAG AGTGCAACAG ATGTGGTGCA GGATTTCAAG
  AAGAGGTCAC ATGGCTTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320087008	CHEV_1_167583754	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217565874					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165481192 () rs orientation: forward

Symbol	Name	Function Class
Rcsd1	RCSD domain containing 1	within coordinates
Rr422410	regulatory region 422410	within coordinates
Rr422411	regulatory region 422411	173 bp proximal
Rr422412	regulatory region 422412	1765 bp proximal
Tssr9810	transcription start site region 9810	256 bp upstream
Tssr9811	transcription start site region 9811	1647 bp upstream
Tssr9812	transcription start site region 9812	1887 bp upstream
Tssr14774	transcription start site region 14774	1033 bp upstream