rs217566374 SNP Detail

Summary

• ID
  rs217566374
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90446340 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACAAGAT GGGTAGTTTG
  TCCTCAGGAG GTGAGGTTGA TTAAAATCTT GTAGGTTTTA GGGAAGATCC TAAGTATGAG
  AGATGAGTAG GGATGGAGCC AACATTTGGA AAGAAGTAAC CACTTAAGCG TACGGAGGTG
  AACCTGGGAG AGTGTGGTGG ACATTCAGAA CTCCAGACCA AGGAAAGAGG TGGGGACCAG
  W
  CTTGGGGGCG GGAGGGTGGG GCTGGAGTGG CTGAGATCCA GGGGCATGGT CAGGGCAATT
  TGGGCTTTTG GAAAAGTCAG CAAGCCAGGA TCAGGTGGGC GGGGGTAGGG GGTGGAGTGG
  GGGAGAGCCT CCTGGTTGCT CAATGATGAA TCAGTCCAGG AGACTATGAG AACATTGGGG
  GGAAGGGTGG GGCCTAAGGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358834118	MGP_WTSI_3_90342955	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217566374					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358834118	MGP_WTSI_3_90342955	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90446340 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr580396	regulatory region 580396			1708 bp distal
Rr580397	regulatory region 580397			780 bp distal
Rr580398	regulatory region 580398			1814 bp proximal
S100a16	S100 calcium binding protein A16			Intron
				Noncoding-Transcript-Variant
Tssr30217	transcription start site region 30217			1792 bp downstream
Tssr30218	transcription start site region 30218			1763 bp downstream
Tssr30219	transcription start site region 30219			1729 bp downstream
Tssr30220	transcription start site region 30220			1707 bp downstream
Tssr30221	transcription start site region 30221			1647 bp downstream
Tssr30222	transcription start site region 30222			612 bp upstream
Tssr30223	transcription start site region 30223			642 bp upstream