rs217566379 SNP Detail

Summary

• ID
  rs217566379
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:96244025 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGCCTAC ACCAACACGC
  AACTGCTGGA GCTGGAGAAG GAGTTCCACT TCAATAAGTA CCTGTGCCGG CCGCGTCGCG
  TCGAGATCGC TGCCTTGCTG GACCTCACCG AAAGGCAGGT CAAAGTCTGG TTCCAGAACC
  GACGCATGAA ACACAAGCGG CAGACGCAGC ATCGAGAGCC GCCCGAGGGA GAACCAGGCG
  K
  GCCGAGCGCC CAGGACGACG CGGGAGAGCC AGCCGAGGAA CCCACGGTCA GCCCGGGCGA
  CGTCGCGACT CACCGGCTGC GGGAAGCCTG CTTCCACCCC GCCGAGGCCG CGCAGGGACC
  CCGGGGCGCA CCGCCGTCAG CGCTGCCTGC CACCACCCTG GAGAGTGTGG GCGCATCGAG
  CCCCGGCTGC ACAATGCTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384367058	MGP_WTSI_11_96214513	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217566379					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384367058	MGP_WTSI_11_96214513	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96244025 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	1023 bp distal
Cpgi3657	CpG island 3657	within coordinates
Cpgi3658	CpG island 3658	1265 bp proximal
Hoxb2	homeobox B2	within coordinates
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr386516	regulatory region 386516	1203 bp upstream
Rr455385	regulatory region 455385	1558 bp distal
Rr455386	regulatory region 455386	1482 bp proximal
Tssr104519	transcription start site region 104519	1564 bp downstream
Tssr104520	transcription start site region 104520	1325 bp downstream
Tssr104521	transcription start site region 104521	1291 bp downstream
Tssr104522	transcription start site region 104522	1231 bp downstream
Tssr104523	transcription start site region 104523	1181 bp downstream
Tssr104524	transcription start site region 104524	1129 bp downstream
Tssr104525	transcription start site region 104525	1061 bp downstream
Tssr104526	transcription start site region 104526	318 bp downstream
Tssr104527	transcription start site region 104527	299 bp downstream
Tssr104528	transcription start site region 104528	113 bp downstream
Tssr104529	transcription start site region 104529	59 bp downstream
Tssr104530	transcription start site region 104530	35 bp downstream
Tssr104531	transcription start site region 104531	125 bp upstream