rs217567269 SNP Detail

Summary

• ID
  rs217567269
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69301230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGCGTTCC GCGGACTACT
  CGTTCACGCG GAGCTCCGGT CAGAACTCTC TTTAGGTTGC AGTCTGTCAG TTACCAATCC
  CTGGGACGCG TACAACGCTA AACTGTGGTC AAGTGCAACC CAACCTGAGT GCCCCAATCA
  AGCCCTGCGG GGGTAGAGAA ACCAGTCATA GACAAACGGC AGCTCGGGGT ACCAGATGTC
  M
  AAGAAGCAGA TCCCGGCTAA GGAAGCGGTG CCCAGAACTC TGCTAGTTAC CAGGAAATGC
  AGCTTCCCCT TCTGCGATGA TGACACTTCC CCTTTCCCAC GGGGAACTGA CTCAGCTTTC
  CCTAAACTAG AGAGTTCCGT CCCTCCAGCC GTCTTGATCT TCAGCCTTTA TCCACAACCT
  CCCACGACGA CACCATGGAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383783481	MGP_WTSI_11_69223906	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217567269					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383783481	MGP_WTSI_11_69223906	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69301230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	within coordinates
Gm72923	predicted gene, 72923	914 bp upstream
Gm72933	predicted gene, 72933	507 bp upstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr369256	regulatory region 369256	421 bp downstream
Rr402670	regulatory region 402670	1508 bp downstream
Rr402671	regulatory region 402671	744 bp downstream
Tssr3543	transcription start site region 3543	1680 bp upstream
Tssr102456	transcription start site region 102456	1460 bp downstream
Tssr102457	transcription start site region 102457	1100 bp downstream
Tssr102458	transcription start site region 102458	715 bp downstream
Tssr102459	transcription start site region 102459	684 bp downstream
Tssr102460	transcription start site region 102460	659 bp downstream
Tssr102461	transcription start site region 102461	625 bp downstream
Tssr102462	transcription start site region 102462	592 bp downstream
Tssr102463	transcription start site region 102463	147 bp upstream
Tssr102464	transcription start site region 102464	421 bp upstream
Tssr102465	transcription start site region 102465	540 bp upstream
Tssr102466	transcription start site region 102466	697 bp upstream
Tssr102467	transcription start site region 102467	915 bp upstream
Tssr102468	transcription start site region 102468	951 bp upstream
Tssr102469	transcription start site region 102469	993 bp upstream
Tssr102470	transcription start site region 102470	1561 bp upstream
Tssr108665	transcription start site region 108665	1842 bp upstream
Tssr108666	transcription start site region 108666	1244 bp upstream
Tssr108667	transcription start site region 108667	993 bp upstream
Tssr108668	transcription start site region 108668	982 bp upstream
Tssr108669	transcription start site region 108669	959 bp upstream
Tssr108670	transcription start site region 108670	835 bp upstream
Tssr108671	transcription start site region 108671	498 bp upstream
Tssr108672	transcription start site region 108672	24 bp upstream
Tssr108673	transcription start site region 108673	within coordinates
Tssr108674	transcription start site region 108674	36 bp downstream
Tssr108675	transcription start site region 108675	203 bp downstream
Tssr108676	transcription start site region 108676	248 bp downstream
Tssr108677	transcription start site region 108677	292 bp downstream
Tssr108678	transcription start site region 108678	308 bp downstream
Tssr108679	transcription start site region 108679	607 bp downstream
Tssr108680	transcription start site region 108680	1261 bp downstream
Tssr108681	transcription start site region 108681	1292 bp downstream
Tssr108682	transcription start site region 108682	1335 bp downstream