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rs217568380 SNP Detail
Summary
  • ID
    rs217568380
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr14:70202547 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACAGTTGCAA AGCTGTCTTG
    ACTGCTAGAG CCCAGGGCAG AAGTAGGGAC ATCATTTTAA ACTAGCTATT GACTCTTGAC
    AAGGGGAAGA TTCTCACATC AGAGCAGGTG GGGAAGGGAG AATTACCTTG GCAACCAAAC
    ATGTCCCAGC ACCAGAGCTC TTGGTAGGAA TGAGGTGCGT GTGTGTGGGG GGGGGGGGGG
    R
    ATACACAGCT CTCCTTAAGA GCTGCCTAGC TGCGGCCCTG ATGGGGCTTC TTAAACAGCA
    GTGGAACACT TTTCCTTGAG CAGACTGAGG GGGAATTTAG CAATCAGCAT AGAGGCATGG
    CTGAGGGAGG GTCCTGGTGT GTAGCAGGGG TGGCAGCAGG GGACATCAAA AACTGGGACA
    CTTGTCAGGC CTGCCTCCTG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
LEWES/EiJ
LG/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss391457086 MGP_WTSI_14_70364905 EVA_MGPV3 EVA_MGPV3 f SNP G A A A A A A A A A A A A A G A A A A A A A A A A A A A A A G A A A A A A A A A G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C58/J
CAST/EiJ
CBA/J
CE/J
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
LEWES/EiJ
LG/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217568380 SNP G A A A A A A A A A A A A A G A A A A A A A A A A A A A A A G A A A A A A A A A G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss391457086 MGP_WTSI_14_70364905 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr14:70202547 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Pebp4 phosphatidylethanolamine binding protein 4 within coordinates
Rr300152 regulatory region 300152 55 bp proximal
Rr389823 regulatory region 389823 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory