rs217571733 SNP Detail

Summary

• ID
  rs217571733
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:76300107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGGGGTG GGGGATGGGA
  AGTGGGGGTG GGGGCAGCCA CATGTCCTGC CATTGGTTGA AACAAGCCAC TCTAACAATG
  GTTGCTAAAT CCATAGCCAT GTGGTGATGT TCTAAGGAAG GACTTATCTG TAGAACAATG
  TGGGGAAACT GTAGCCAGAC AACGGTAATG TTGGGAAGGA GCCAAAGAAA CTTATTCTAA
  R
  AACTAACATT TTGTTTACAG ATTAGCATTT ATAGGGAAAA ACTAAATCCA ATGTACCAGG
  CCCTAGGGCA GCTTGGGACT TCCCTATAGC TGAACAGCTT CTGCTGTGAA CAGCTGTCTG
  AATCCAGACA TCTCAGGGAC AGCTTGTAAG GAGGCAGTTG TCTGAATCCA GCCATCTCAA
  GGACAACTTC TCCATCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324104723	CHEV_12_77354320	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217571733					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:76300107 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4777	CpG island 4777	1554 bp proximal
Gm47525	predicted gene, 47525	842 bp downstream
Mthfd1	methylenetetrahydrofolate dehydrogenase (NADP+ dependent), methenyltetrahydrofolate cyclohydrolase, formyltetrahydrofolate synthase	1965 bp upstream
Rr403350	regulatory region 403350	1712 bp upstream
Rr468112	regulatory region 468112	1475 bp proximal
Tssr113934	transcription start site region 113934	1876 bp upstream
Tssr113935	transcription start site region 113935	1911 bp upstream
Tssr113936	transcription start site region 113936	1957 bp upstream
Tssr113937	transcription start site region 113937	1999 bp upstream
Tssr116711	transcription start site region 116711	1713 bp downstream
Tssr116712	transcription start site region 116712	1739 bp downstream