rs217573624 SNP Detail

Summary

• ID
  rs217573624
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:96242499 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCCTCTGGA GTTTTTGAAT
  CAATTAAAGC AAATAATGCC TGTGTTTTCC ACTAGGCCTA GACTAGCGAT TGGCGGAGAC
  CGGTCCCGTG ACCATGAATT CCCTGCAATT TCGGCGGAGT CCTGGGTTTA ATAGAGAGAG
  TCCCCATACG CTTGTATTTA TCAGCAATAT ACAATTATAA AGGCCTAAAT TTAAAAAAAA
  A
  AGAGAGAGAG CGAAATCTCC CCCCCCCCGC GAAATTGCTC CATTGCATAA ACCTGGGGGG
  GGCGGGAGAG GGGGGTCCCT CTGATTCTCC CTCCTGACGC CCCCCCCAGC AGGCCCCCTC
  CCCCACCATT GAAAGCCATG AATTTTGAAT TTGAGAGGGA GATTGGGTTT ATAAACAGCC
  AGCCATCGCT CGCCGAGTGT                                            
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
ss384367035	MGP_WTSI_11_96212987	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	ZALENDE/EiJ
rs217573624					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384367035	MGP_WTSI_11_96212987	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:96242499 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3656	CpG island 3656	339 bp proximal
Cpgi3657	CpG island 3657	995 bp proximal
Hoxb2	homeobox B2	mRNA-UTR
Hoxb3os	homeobox B3 and homeobox B2, opposite strand	within coordinates
Rr141	regulatory region 141	1225 bp distal
Rr454	regulatory region 454	1453 bp distal
Rr455383	regulatory region 455383	1598 bp distal
Rr455384	regulatory region 455384	1205 bp distal
Rr455385	regulatory region 455385	32 bp distal
Tssr104519	transcription start site region 104519	38 bp downstream
Tssr104520	transcription start site region 104520	196 bp upstream
Tssr104521	transcription start site region 104521	225 bp upstream
Tssr104522	transcription start site region 104522	277 bp upstream
Tssr104523	transcription start site region 104523	301 bp upstream
Tssr104524	transcription start site region 104524	381 bp upstream
Tssr104525	transcription start site region 104525	447 bp upstream
Tssr104526	transcription start site region 104526	1191 bp upstream
Tssr104527	transcription start site region 104527	1213 bp upstream
Tssr104528	transcription start site region 104528	1402 bp upstream
Tssr104529	transcription start site region 104529	1454 bp upstream
Tssr104530	transcription start site region 104530	1482 bp upstream
Tssr104531	transcription start site region 104531	1651 bp upstream
Tssr110331	transcription start site region 110331	1546 bp upstream
Tssr110332	transcription start site region 110332	1474 bp upstream