rs217575740 SNP Detail

Summary

• ID
  rs217575740
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:152682067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGATCTGAG AGTGTAGCTG GCAGCAGGAG
  CCAGCCAGTA GAAGCCTGCA CAGATGTAGA AACTGAGAAG CCAAGGAAAT CACTTGGAAG
  TTTAAATGTC AGGCTAGGAt gctgctgctg ccgctgccgc tgctgctAag gaggaggagg
  W
  agaggaggaa gaTCACAACA TTGCTTATAA AAAGCCTTGT TTGGCTACAA GTCTACTTGA
  TTTCCCTGAG AGTAATCACT GTACTGGTCA AGTTCTGTTC ATTCATTGGT CAAAGTCACA
  GATGTGGCTA TTACCTGTGG GTCATTTCTC                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320068342	CHEV_1_154653446	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217575740					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:152682067 () rs orientation: forward

Symbol	Name	Function Class
Ncf2	neutrophil cytosolic factor 2	Intron
Rr420547	regulatory region 420547	1207 bp proximal
Tssr9423	transcription start site region 9423	1456 bp upstream
Tssr9424	transcription start site region 9424	1503 bp upstream
Tssr9425	transcription start site region 9425	1511 bp upstream
Tssr9426	transcription start site region 9426	1561 bp upstream
Tssr9427	transcription start site region 9427	1589 bp upstream
Tssr9428	transcription start site region 9428	1602 bp upstream
Tssr9429	transcription start site region 9429	1632 bp upstream
Tssr14234	transcription start site region 14234	1994 bp downstream