rs217583011 SNP Detail

Summary

• ID
  rs217583011
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:29409422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCAGCCC AGATGTGCGC
  ATTCTGAGTT TCCCCACTCT GGTCCTTTGG GGTGTAGAGA TGGGAACGAA CGCATAACAA
  ACTTTCTTTG CTTTCTTTTA TTTCTTTCAG AAACAGAAGC CCCCGCACCC AACCAAAAAC
  TCAGGTACCA GTGATGCTGA GACACAGGAC CCTGCCCCAC CCCGGCAAGT GTGTAGCTCC
  R
  GGGTCCGGGA CACTACAGAA TGGAGTAGAC TGGGATAAGC CTATTGGCAT GAGCTATGCG
  GGGCAAACAG CCGTGTTCTT CCTAGCTTCG CTTTCCTCAC TGGCCCCGAA ACTCAGTGCC
  CAGCGGACCA AGCTGGCCAG GAGTGGCGAT GTGGCCCCCC AGGCTGCCGC TTCAGTATAC
  CGCAGCAGCA GGGCCTGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss379870987	MGP_WTSI_10_29253232	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217583011					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	A	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss379870987	MGP_WTSI_10_29253232	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:29409422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1415	CpG island 1415	103 bp proximal
Cpgi1416	CpG island 1416	1050 bp proximal
Cpgi1417	CpG island 1417	1996 bp proximal
Gm48159	predicted gene, 48159	1291 bp upstream
Rr429491	regulatory region 429491	200 bp distal
Rr429492	regulatory region 429492	445 bp distal
Rr429493	regulatory region 429493	271 bp distal
Rr429494	regulatory region 429494	801 bp proximal
Rr429495	regulatory region 429495	1302 bp proximal
Rspo3	R-spondin 3	Intron
Tssr92878	transcription start site region 92878	1695 bp upstream