rs217585350 SNP Detail

Summary

• ID
  rs217585350
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128580744 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAACGT TTGACTGTGT
  TCACCTTTTC TTCATACCCA ACCCTAGCAC TTTACCCTCT GGCCTTGGCA GATGGCACAG
  AAGTCGTTGG GCAAAGGTAG AGTCTGAAGG CAGAGCCTTT CAGTTCCTCC TACCTGTTAT
  TGGAGCTGTC AGGACTCTTG AAGCAGCATG GTTGGTGTGA GGCTGAACGG AAAGGAGACC
  M
  ATGAGTGGGG ATTTACTGGT AGGGACTGGG GACCCAGGCA TCCTGCATCC CCCGCCCCGC
  CCCAAACCCA CGACTAACTC CCTCCTACCC TTCTCTGAAG TAGGAGCAGC ACAACAAAGC
  CTTGTGTTCT TGGAATTGTA TCCTCTTACA GCTGGGAATA GAAAGGAGTG GGAGAGCAGA
  CTGCTTGTTG GAAATGTGTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323535808	CHEV_10_128181931	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217585350					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128580744 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	652 bp distal
Dgka	diacylglycerol kinase, alpha	20 bp upstream
Gm31504	predicted gene, 31504	72 bp upstream
Gm66065	predicted gene, 66065	1094 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr385480	regulatory region 385480	1320 bp downstream
Rr402364	regulatory region 402364	within coordinates
Tssr96440	transcription start site region 96440	53 bp downstream
Tssr96441	transcription start site region 96441	62 bp upstream
Tssr96442	transcription start site region 96442	318 bp upstream
Tssr96443	transcription start site region 96443	1582 bp upstream
Tssr99941	transcription start site region 99941	1030 bp upstream
Tssr99942	transcription start site region 99942	965 bp upstream
Tssr99943	transcription start site region 99943	903 bp upstream
Tssr99944	transcription start site region 99944	880 bp upstream
Tssr99945	transcription start site region 99945	790 bp upstream
Tssr99946	transcription start site region 99946	766 bp upstream
Tssr99947	transcription start site region 99947	623 bp upstream
Tssr99948	transcription start site region 99948	593 bp upstream
Tssr99949	transcription start site region 99949	within coordinates
Tssr99950	transcription start site region 99950	171 bp downstream
Tssr99951	transcription start site region 99951	194 bp downstream
Tssr99952	transcription start site region 99952	207 bp downstream
Tssr99953	transcription start site region 99953	212 bp downstream
Tssr99954	transcription start site region 99954	570 bp downstream
Tssr99955	transcription start site region 99955	603 bp downstream
Tssr99956	transcription start site region 99956	1358 bp downstream
Tssr99957	transcription start site region 99957	1425 bp downstream