rs217602281 SNP Detail

Summary

• ID
  rs217602281
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:43115782 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGACTAG TCAGCCTCGT
  AGGCTAGTAA GTAGGGTCCG TGAGCGTGGA AGGGAGGGAG TCACAAAGAG GCCAGACCAC
  GCAGGAGGAT AGAGCTACCT AGGAAAAGAG GCGGAGCGAA ACCTGGAGGA GAAGTGGAGC
  ATCCTGTGTA GAGGCAGGAT AGGGGAAGAT GGAAGGGCTA AGGCTGGAAA GTCTTTCGTC
  K
  GTTGCAGATC TGCCCCCCGG AGCCCCACAA TGCTCAGTTG AAGGAGGTCC TGTGGACCGC
  AGCCTCCGCT TTCGCTGCTC CTGGCCTGGC GGGGTCCCTG CCGCCTCCCT GCAGTTCCAG
  GGTCTTCCCG AAGGCGTCCG AGCGGGACCG GTGCCATCTA CGCTCCTGGT GACTGTCCCC
  GCCCGCCCGG AGCTCAGCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371132501	MGP_WTSI_7_50721728	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217602281					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371132501	MGP_WTSI_7_50721728	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:43115782 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18932	CpG island 18932	347 bp distal
Cpgi18933	CpG island 18933	within coordinates
Gm39000	predicted gene, 39000	within coordinates
Rr400282	regulatory region 400282	327 bp downstream
Rr645966	regulatory region 645966	1494 bp distal
Rr645967	regulatory region 645967	829 bp distal
Rr645968	regulatory region 645968	256 bp distal
Rr645969	regulatory region 645969	759 bp distal
Rr645970	regulatory region 645970	67 bp distal
Rr645971	regulatory region 645971	219 bp proximal
Tssr66010	transcription start site region 66010	337 bp downstream
Tssr72135	transcription start site region 72135	768 bp upstream
Vsig10l	V-set and immunoglobulin domain containing 10 like	within coordinates