rs217613412 SNP Detail

Summary

• ID
  rs217613412
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95740546 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGAATTT GGGTGGCAGA
  GGTGCCCCTA GGCCAGCCAG GACTAAATAG TGAGACCTTG CCTCTGGAAA GACAAAGACA
  AGAGAAAAAA GGGGGTGGGG GGAAGCAAAC CCCTTGTTTC TGTCAACCTC GAGAGTCAAA
  GGAGAACCGG GTTCCAATCA GAAATTAGCG CTTGCCACGC CCCTTCTGCG CTCTAGGTTT
  Y
  CCTCTGTCAG GACACCGCAG CCATTGAGTT CTCAAGTCGG TTCTCTCAGG CTGGAAAGTT
  TGCACGTAGA GTTAGTGCTG ACCTTAAGTC TGTGAGCTAT CAGTTTCCTT TTAGTTTTGC
  ACCGCAGCGA TGTTCATTTC CTCCTGTTGG CCATACCAAA AACCGAAAAC CTAAATTAGA
  GGATAAATGA AAAGACCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323104525	CHEV_9_95758912	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217613412					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95740546 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	611 bp upstream
Atr	ataxia telangiectasia and Rad3 related	within coordinates
Cpgi22158	CpG island 22158	within coordinates
Rr198099	regulatory region 198099	1455 bp proximal
Rr206894	regulatory region 206894	within coordinates
Rr368834	regulatory region 368834	782 bp downstream
Rr401608	regulatory region 401608	29 bp upstream
Tssr86577	transcription start site region 86577	807 bp downstream
Tssr86578	transcription start site region 86578	783 bp downstream
Tssr86579	transcription start site region 86579	542 bp downstream
Tssr90940	transcription start site region 90940	923 bp upstream
Tssr90941	transcription start site region 90941	617 bp upstream
Tssr90942	transcription start site region 90942	598 bp upstream