rs217616302 SNP Detail

Summary

• ID
  rs217616302
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:141940249 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCTAACCA TCCAAGAGGC
  TTCAACACCA ACTCCTCATG CTCTCCCTAG CCATCCCTGC ACACAATCTG GCAACTCTCA
  CCCAAGAAAC CTACATGCCC TACCACCACA GACTCAAGGC CCTTATATGC TCCCTGCAGC
  CCTGATGCAG ACAACTAAAT AGGGGACGCC ACCATTAGAT AGCAGAGGGA GAGGGGTCCC
  Y
  GCCCTGCCCT CCAGGTCACC TCTCCACCAC CACCCCACCC CCCACCCCCA GTTTGCTCCT
  GTTCCCAAGG AGAGCTGATC TGTAATCACT TGTTGAAACT TCTCTGCCCA GGGATTTGTA
  GCCAAGGTCA CAGCTGACCT TTCCTGGCAT GCACAGTGCA TGCTCTGAGA GACATAGGAG
  TCTTGCCTAA GAGTAGTGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373450100	MGP_WTSI_7_149572417	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217616302					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373450100	MGP_WTSI_7_149572417	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:141940249 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19961	CpG island 19961	921 bp proximal
Ctsd	cathepsin D	within coordinates
Rr381604	regulatory region 381604	within coordinates
Rr658152	regulatory region 658152	1829 bp distal
Rr658153	regulatory region 658153	within coordinates
Rr658154	regulatory region 658154	1320 bp proximal
Rr658155	regulatory region 658155	1335 bp proximal
Tssr70145	transcription start site region 70145	1023 bp downstream
Tssr70146	transcription start site region 70146	1002 bp downstream
Tssr70147	transcription start site region 70147	488 bp upstream
Tssr70148	transcription start site region 70148	1658 bp upstream
Tssr70149	transcription start site region 70149	1714 bp upstream
Tssr75787	transcription start site region 75787	923 bp upstream
Tssr75788	transcription start site region 75788	901 bp upstream
Tssr75789	transcription start site region 75789	881 bp upstream
Tssr75790	transcription start site region 75790	611 bp upstream
Tssr75791	transcription start site region 75791	588 bp upstream
Tssr75792	transcription start site region 75792	575 bp upstream
Tssr75793	transcription start site region 75793	159 bp downstream
Tssr75794	transcription start site region 75794	313 bp downstream
Tssr75795	transcription start site region 75795	337 bp downstream
Tssr75796	transcription start site region 75796	1308 bp downstream
Tssr75797	transcription start site region 75797	1341 bp downstream
Tssr75798	transcription start site region 75798	1383 bp downstream
Tssr75799	transcription start site region 75799	1407 bp downstream