rs217620517 SNP Detail

Summary

• ID
  rs217620517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72437904 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGTAAC TCTGCTGAGC
  CCTCTAGCGG TGACTGTGGG ATGCGTGGCT CTTTATGGAA CCTATTAAAA ACTGAAAAGT
  TGCACTCGGG AAGCCAGCCT GTGTGACACC GGTAGTGAAG TTATTTTAAA GACATCTCGG
  TTCTCAACTT CCTTTTCTTA AGGTCTTTAG CAGGTCCTAG TTACCTTTCT TTGTTGATTC
  Y
  CCCCCTCCCC CCCCTCCCCG AATGTGGCAA TGTGAGGCCA TCACTCTTCG GGTTTAAAAA
  AAAAAAATTA GAAAAAGGGG TCTGGGCCAC TTTTCCCATT GTCTTTTTAT ATCATCTTCC
  CCGTGAATAC AGAATTATAA ATATGCATTC TGGAACACAG TCTGGATCCT CAGGAGGAAA
  CTGTATTTTG CAAGGGTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss378020689	MGP_WTSI_9_72378429	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	LEWES/EiJ	LP/J	MOLF/EiJ	PWK/PhJ	SPRET/EiJ	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs217620517					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378020689	MGP_WTSI_9_72378429	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72437904 () rs orientation: forward

Symbol	Name	Function Class
4930509E16Rik	RIKEN cDNA 4930509E16 gene	within coordinates
Cpgi22017	CpG island 22017	846 bp proximal
Rfx7	regulatory factor X, 7	1618 bp upstream
Rr401508	regulatory region 401508	within coordinates
Rr401509	regulatory region 401509	997 bp upstream
Rr682766	regulatory region 682766	146 bp distal
Rr682767	regulatory region 682767	201 bp distal
Rr682768	regulatory region 682768	within coordinates
Rr682769	regulatory region 682769	528 bp proximal
Rr682770	regulatory region 682770	1128 bp proximal
Rr682771	regulatory region 682771	1329 bp proximal
Tssr86008	transcription start site region 86008	1106 bp upstream
Tssr86009	transcription start site region 86009	1311 bp upstream
Tssr86010	transcription start site region 86010	1562 bp upstream
Tssr86011	transcription start site region 86011	1592 bp upstream