rs217624489 SNP Detail

Summary

• ID
  rs217624489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:60711592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCTCCTT CCGAAACCGG
  GTCACCGCCC CGCGCGCTCG GCGCAGGCCT GGGGAGCGCG GCAGCCTCAC CTGCTTGCGG
  TAGGGCGTCC TGCAGCCGCC GGCAGCGCCG GGGTGGCCGC TGCCGCTGGG GAAGATCATC
  TCGGGCGCGG GGAGCTGAGG CAACCGGGGC CGCGGCGCTC CGGGAACTCC CTCTCTCGCC
  Y
  GTCCGGGCAG GCGGAGGGAG GATGCGGCCG GGGACTGGCT CGCGGCTCCC GCCCTAAAAG
  TGCGGCGCGA CGCGCGCGGC CGGCGACTCT CGAGCAGCTC CGGGGGCCGC CGCCCTGCGT
  GCCATGGACC GGAGTTCGCG CGCGGTGCCG GCGGCAGCGG ACGAGCAGCG CCGCCGCGTC
  CCCACCTCCC GCCGCCTCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss354169589	MGP_WTSI_2_60719305	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs217624489					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354169589	MGP_WTSI_2_60719305	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:60711592 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11682	CpG island 11682			within coordinates
Gm50617	predicted gene, 50617			1718 bp downstream
Gm74812	predicted gene, 74812			within coordinates
Rbms1	RNA binding motif, single stranded interacting protein 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr396988	regulatory region 396988			251 bp downstream
Rr557730	regulatory region 557730			1758 bp distal
Rr557731	regulatory region 557731			257 bp distal
Rr557732	regulatory region 557732			180 bp proximal
Rr557733	regulatory region 557733			977 bp proximal
Tssr24230	transcription start site region 24230			42 bp upstream
Tssr24231	transcription start site region 24231			23 bp downstream
Tssr24232	transcription start site region 24232			49 bp downstream
Tssr24233	transcription start site region 24233			86 bp downstream
Tssr24234	transcription start site region 24234			112 bp downstream