rs217634764 SNP Detail

Summary

• ID
  rs217634764
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:20291680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCCTCAGG GCAGCAGCGC
  GCGCAGCAGG AGGGGAGGAG AACCCACCTG AAGCGCCGCG CCGCGCGTGC GGGAGCTTGA
  GGTGGGTGGA GCCTCGAAGC CGGTGGCGCT CGTGACGGCG CCCAGCCCGC CAGAAGATCG
  CGCGGCGAGC AGACGGCGGG GAGTCAGCCG GGTAGGGCGA GCGCAGCCGG CGGGGGTGGG
  G
  GGAGGTGGGG GGGGGTGGGG CGGGGAGTTG CAGTGATGAG GAAGGAAAGG GAAGAGGCGG
  AGCGTGGGAG CGCACAGTGT CAGGAATACA ATAGTGCTCC GCGCCGCCTC GGCTGCCGCC
  GCCGCCCAGC AGCCTGTCCA GAGCTGAGGC CTGAAGGGCC AGGCGGCCAG GGCCGGGGGC
  GGGAGCAGAG CGCTAGGGGG                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J
ss403198118	MGP_WTSI_X_20002567	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	LG/J	MA/MyJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SWR/J
rs217634764					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403198118	MGP_WTSI_X_20002567	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:20291680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22644	CpG island 22644	within coordinates
Jade3	jade family PHD finger 3	247 bp upstream
Rr690392	regulatory region 690392	within coordinates
Rr690393	regulatory region 690393	186 bp proximal
Rr690394	regulatory region 690394	258 bp proximal
Rr690395	regulatory region 690395	531 bp proximal
Rr690396	regulatory region 690396	875 bp proximal
Tssr160640	transcription start site region 160640	63 bp downstream
Tssr160641	transcription start site region 160641	302 bp upstream
Tssr160642	transcription start site region 160642	339 bp upstream