rs217635216 SNP Detail

Summary

• ID
  rs217635216
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:112415739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGTC ACACACAGAG ATCTCACACA
  G
  AGAGAGACAT ACACACAGAG ATAGA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321645164	CHEV_5_112696893	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217635216					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:112415739 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16256	CpG island 16256	1399 bp proximal
Crybb1	crystallin, beta B1	within coordinates
Rr617312	regulatory region 617312	1172 bp distal
Tssr47978	transcription start site region 47978	348 bp downstream
Tssr47979	transcription start site region 47979	316 bp downstream
Tssr47980	transcription start site region 47980	1437 bp upstream
Tssr47981	transcription start site region 47981	1584 bp upstream
Tssr47982	transcription start site region 47982	1601 bp upstream
Tssr47983	transcription start site region 47983	1615 bp upstream
Tssr47984	transcription start site region 47984	1624 bp upstream
Tssr47985	transcription start site region 47985	1635 bp upstream
Tssr52559	transcription start site region 52559	511 bp upstream
Tssr52560	transcription start site region 52560	472 bp upstream
Tssr52561	transcription start site region 52561	1612 bp downstream
Tssr52562	transcription start site region 52562	1656 bp downstream