rs217636425 SNP Detail

Summary

• ID
  rs217636425
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:104544067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTTTTGAG GTCAACAAAC
  AAAACCATCC AGAAACTTCC CACCTCTCTA GTTCACCTTT TCAAACCATC TCCCTGAACA
  GTTACCACAA TAACACTTCG AGTACCCCCA CTTCCGTTTT TTGTGGTGCT GAAGGTCTAA
  ACAGGGGCCA GACTCCTGCA AGCTAAATGT TGTACCACTG AATGTCTTAT CCTAACAACC
  Y
  TAAACCACTA CTGTTTTAAG TTCCAACCAC CCTAAAGACC TGAAGAGCTT TTCCCTTCTA
  TGTATTTATC AGATGTAAAA GACAAAATAT TGCTCATAAG CAGCACTTGG TGGATTTCAA
  ACTGGATCCT ACTAAGAGTT CCTAGTATGA ACTCTTCATA CTGAAAGGAG GCAGAGGGGA
  GCTGAAGGCA CACAGGGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359092798	MGP_WTSI_3_104440674	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217636425					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359092798	MGP_WTSI_3_104440674	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:104544067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13645	CpG island 13645	1210 bp proximal
Gm65697	predicted gene, 65697	523 bp downstream
Rr64724	regulatory region 64724	467 bp distal
Rr77003	regulatory region 77003	within coordinates
Rr367518	regulatory region 367518	1539 bp upstream
Slc16a1	solute carrier family 16 (monocarboxylic acid transporters), member 1	1917 bp upstream
Tssr31045	transcription start site region 31045	1907 bp upstream
Tssr34883	transcription start site region 34883	806 bp downstream
Tssr34884	transcription start site region 34884	1678 bp downstream
Tssr34885	transcription start site region 34885	1781 bp downstream