rs217640259 SNP Detail

Summary

• ID
  rs217640259
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:78956928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAATT GCCAAATCAT
  GACTCTGCCC AAGCTCATCC ACTAAACTAC GGAAGGAACA GGGTGGCTCT CAACCTACTT
  GGATTCTGCG GCTTTTCAGC TCTGTGATGC TTCAAAGGCA GTTCAATAGA GACACTTATT
  TCAGATTTGT ACGTTTTTGT CTTTTCCCAG AAAAATGCTG CAAGTCCCTT TGTTGTTTTC
  C
  TGTTTTGTTT CTGTTTTGTT TTTTGTTTTT GTTTTTGTTT GGTTGGTTTT TTTTTTTTTT
  TTTTTAGATA AGATCTCACT ACCTAGTTCA AACTGATCTC AGACATGTTA TGTAGCAAAG
  GCTGGCTCAA ACGCAAGATC TTCCTGCCCC AGGACTTTCA TGCTGGTCTA CAGGTGTGCA
  CCATCACCTG TGTGGCCCTC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324107219	CHEV_12_80011141	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217640259					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:78956928 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4797	CpG island 4797	1799 bp proximal
Gm46359	predicted gene, 46359	821 bp upstream
Gm56547	predicted gene, 56547	772 bp upstream
Rr387474	regulatory region 387474	within coordinates
Tssr114072	transcription start site region 114072	1776 bp upstream
Tssr116800	transcription start site region 116800	1767 bp upstream