rs217642168 SNP Detail

Summary

• ID
  rs217642168
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:77969466 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGTAGTTCT TGATCTTGGG
  TGTTTTTTCT GTTTTTAACT CTAACATGCT TAATAAACAC AGATTGTAAT TTTTGAATTA
  ATAGCATGTG CATCAAAAAT ATCAGTGCAC GTGTTATTTC CATGAGGACT TCCCGTGGTG
  ACGGCGACTC TCTGTTATGT TTTTCTTGAC CAAAAACACT CCTAAGCTGG TATGAGTAGG
  Y
  CATTCAAAGG AAATTTCTGT GCTACTTTCT TTCAGAAAAG AAAGCTTTCC TCAGCTACTG
  CTTCTGTGAC ATGATGTGAG ATCCAGAGAG CAGCAGTCCA TAACCAAATC GCGTCGATCA
  TGAAGACTTT GATGTGAATC CTTGTTGAAA AATTGTTTTT TTTGATATTT TAAATTTATA
  GTATACATTT GACTCAACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401317868	MGP_WTSI_18_78120505	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217642168					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401317868	MGP_WTSI_18_78120505	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:77969466 () rs orientation: forward

Symbol	Name	Function Class
Gm58860	predicted gene, 58860	1959 bp downstream
Pstpip2	proline-serine-threonine phosphatase-interacting protein 2	within coordinates
Rr541209	regulatory region 541209	1526 bp distal
Rr541210	regulatory region 541210	1256 bp proximal
Tssr152066	transcription start site region 152066	422 bp upstream
Tssr152067	transcription start site region 152067	454 bp upstream
Tssr152068	transcription start site region 152068	484 bp upstream
Tssr152069	transcription start site region 152069	585 bp upstream
Tssr152070	transcription start site region 152070	700 bp upstream
Tssr152071	transcription start site region 152071	731 bp upstream
Tssr152072	transcription start site region 152072	752 bp upstream
Tssr152073	transcription start site region 152073	785 bp upstream
Tssr152074	transcription start site region 152074	814 bp upstream
Tssr152075	transcription start site region 152075	834 bp upstream