rs217647195 SNP Detail

Summary

• ID
  rs217647195
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:107464478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTTCCAGG ACAGCCAGGG
  CTATACAGAG AAACCCTGTC TCAGAAAAAA AAAAAAAAAA AAAAAAGAAG CTTCCGGGTC
  AGTTCCAGGC ATTTAAGGTG ACTAGCCTAG GACTTTGTTC CTATACCCCA GCGTATCTAT
  AGAGAAGTAA AATCTAGGTT CAGACAACCC CTACATGCCT CCCAACACAC ATCCCCCCCA
  M
  AAAAAATTAA GCTAAGGTCT GTTAAACGCT AAGCTATTAT CTGTATTTTT ATCCATAAAG
  TCACTCTTTC ATTACTTGAA GTTTGTCCTC ACCATTCTAT CTAGGGCCAA ACCTGGCGCC
  TCCAAGCAGG TGCTTCGTTA TCAGGCCCTG CAGACGCTTC TAGTGAGAAA GGAAACTACT
  GAGTTAACTA TGAACCGCGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323191750	CHEV_9_107489610	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217647195					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:107464478 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22297	CpG island 22297	139 bp proximal
Gm16343	predicted gene 16343	within coordinates
Gm68835	predicted gene, 68835	977 bp downstream
Hyal3	hyaluronoglucosaminidase 3	within coordinates
Ifrd2	interferon-related developmental regulator 2	439 bp upstream
Rr401663	regulatory region 401663	58 bp upstream
Rr686552	regulatory region 686552	179 bp proximal
Rr686553	regulatory region 686553	374 bp proximal
Rr686554	regulatory region 686554	1368 bp proximal
Tssr87008	transcription start site region 87008	363 bp upstream
Tssr87009	transcription start site region 87009	394 bp upstream
Tssr87010	transcription start site region 87010	432 bp upstream
Tssr87011	transcription start site region 87011	478 bp upstream
Tssr87012	transcription start site region 87012	587 bp upstream