rs217647882 SNP Detail

Summary

• ID
  rs217647882
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:35962701 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCCAGGC ATCTCCTACA
  AAGGGGTCCT GTGGTATTTA TTTACTTATG TATTTGTAAA GTTGCATGGA AAAAAGGTGA
  AGCTTGACGC GTGGGGGAGC TCAGCCTGGG AGGACCTCGC CAGGACGCGG GGATCTTGAG
  GCGCAACGGC TGCGACTCCA GCTTCAGAGC CTGCGGCGTC CAAGTGGCCA AAGCTGATCT
  R
  GGAGGGAGGC CGCGGAGGAG GGAGGGAATC CGAGGTGGAG AGGGGGGGGT GAGGGAGCCG
  CTAGTCCGGT CCGGGTTTTG CCGGCAGCCC CCGGGCAGCG TTCGGAGCTC CTGCCCGGGC
  GGGCGCGCGG CGCGGCGGCA GAGGCGGCGG AGCCTGAGCT GGGATGTAGA GGCGGCGGCG
  AGATCAGGCG TCCGAGCAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss400266028	MGP_WTSI_18_35989302	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs217647882					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400266028	MGP_WTSI_18_35989302	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35962701 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cxxc5	CXXC finger 5			Intron
				mRNA-UTR
Gm29417	predicted gene 29417			741 bp downstream
Gm50371	predicted gene, 50371			within coordinates
Rr535968	regulatory region 535968			1351 bp distal
Rr535969	regulatory region 535969			within coordinates
Rr535970	regulatory region 535970			97 bp distal
Rr535971	regulatory region 535971			151 bp proximal
Rr535972	regulatory region 535972			1435 bp proximal
Rr535973	regulatory region 535973			1478 bp proximal
Tssr150566	transcription start site region 150566			833 bp downstream
Tssr150567	transcription start site region 150567			780 bp downstream
Tssr150568	transcription start site region 150568			82 bp upstream
Tssr150569	transcription start site region 150569			131 bp upstream
Tssr150570	transcription start site region 150570			150 bp upstream
Tssr150571	transcription start site region 150571			180 bp upstream
Tssr150572	transcription start site region 150572			192 bp upstream
Tssr150573	transcription start site region 150573			443 bp upstream
Tssr150574	transcription start site region 150574			531 bp upstream
Tssr150575	transcription start site region 150575			652 bp upstream
Tssr150576	transcription start site region 150576			1323 bp upstream
Tssr152918	transcription start site region 152918			477 bp downstream