rs217661948 SNP Detail

Summary

• ID
  rs217661948
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117584390 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCAGCAA GTCAGCCAGA
  AGATGAGCCC GTGGGACATT TTTTTCAAAT GTTACTCCAT GTGGGAGGCT CAGCTTACTG
  GAAAGTGCCA TCTTTCTGTA GGTGGTTCTG GGTTAGATCA AGCAGGCTGA CCAAACCCTA
  GGAAGCAAGC TGCCAGGAAG CAGTTACTAG AGGGCCTCTG CTTCAGTGCC TGCCCTCCCG
  Y
  CCCTCACTGA TGGAATATTA ACTAAAAGTG CAAGGTAAAA TAAGCCCTTT GCTCCCCAAG
  TTTCTACAGC AGGAGAAACC CTAGGGCACC GCTTGCTTAG CCTTACCAAG GACAGTCCCT
  GTTTTCTTTT TCTTTCTTTT TTTTTTTTTT CCGAGACAGG GTTTCTCTGT GTGGCCCACG
  CTGTCCTGGA ACTCACTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499200	CHEV_10_117185541	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217661948					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117584390 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2239	CpG island 2239	1830 bp distal
Gm66856	predicted gene, 66856	462 bp downstream
Rr439611	regulatory region 439611	1994 bp distal
Rr439612	regulatory region 439612	1644 bp distal