rs217677098 SNP Detail

Summary

• ID
  rs217677098
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142265127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTAATGATA ACTTGTAGCA
  GTTAATAATA AAAGCATATC TGTTGTAGCT CACCTGGAAC TCTATTAACT GAAAAGTCAG
  TCTGTCTATG TCTTGTTTTT AATGTTGAAA GTTTGCTTTT TGCATGAATT ATTTGAAAGT
  AGTCTATACA TGAAGTACAT GAAGTAGTCT GAGCACAGCC AACTTAGCAT ACATGAACCC
  Y
  GTCCCACATA TTGTATATAT ATTTTGAGAC AAAATTTTCA TGTAGCCCAG GCTAGCCTCA
  AGCTTAATAT ATAGCTCAGA ATGGTTCCCC TGCCTCCACT TCCATGGCCA GTTCACATAG
  ACAATATTTT AAATAATTCA TGAAAGCAGG AAACTTTTAT AGAACAGATT TTTTTTACTT
  GTGATTTTAT GTCAGAACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360023075	MGP_WTSI_3_142222330	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217677098					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360023075	MGP_WTSI_3_142222330	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142265127 () rs orientation: forward

Symbol	Name	Function Class
Gbp3	guanylate binding protein 3	660 bp upstream
Rr398085	regulatory region 398085	944 bp upstream
Rr586453	regulatory region 586453	218 bp proximal
Rr586454	regulatory region 586454	1056 bp proximal
Rr586455	regulatory region 586455	1463 bp proximal
Tssr32157	transcription start site region 32157	698 bp upstream
Tssr32158	transcription start site region 32158	742 bp upstream
Tssr32159	transcription start site region 32159	788 bp upstream
Tssr32160	transcription start site region 32160	827 bp upstream
Tssr32161	transcription start site region 32161	985 bp upstream
Tssr32162	transcription start site region 32162	1172 bp upstream
Tssr32163	transcription start site region 32163	1206 bp upstream
Tssr32164	transcription start site region 32164	1239 bp upstream
Tssr32165	transcription start site region 32165	1255 bp upstream
Tssr32166	transcription start site region 32166	1591 bp upstream