rs217681586 SNP Detail

Summary

• ID
  rs217681586
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:94562015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCCATATT TCTCTAACCA
  AAGCCCTGAT AGAGTAACAT TTCTGTACCA TATTGAATAT CAGTAAGACT CAAGACACTT
  GGCTGTGAAA TGAGGTTTAT AGTGAGACAG CTATAGTACC TGATTCTGAG AGGATGTTAG
  CATGCTAGCA TTCCAAGGGA GGAAAAGGCC AGTCGGCTGC TGGCACAGTC TAACGTTTCT
  Y
  GGGATAAGAA CGTTTTATAC TCATTTCTTT CTGGCTCACA CACGCTGCAG AACATCTTAT
  ACATCAGTGG CAGGCAAATA GAAAAGAGTG CCTAATGAGA TAAGAGGGAA TCCAAATGTC
  AGGGCTGGTG TTTCTGAACG ATCCTTGGCG GGAGCACCCC AGAAGCTCCT TGCTCTTCCT
  GTCCTCTCTC CTCTCTTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323093465	CHEV_9_94580381	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217681586					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:94562015 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr383780	regulatory region 383780			within coordinates
Rr684730	regulatory region 684730			391 bp proximal
Slc9a9	solute carrier family 9 (sodium/hydrogen exchanger), member 9			Intron
				Noncoding-Transcript-Variant