rs217689971 SNP Detail

Summary

• ID
  rs217689971
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:128769781 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGGGGGC ATGGGGCGGG
  AAGGGGCGGG GTCTGGGGCG GTGTCCCAGA GAGGAGGCGG AGCCGGAGCC GGAGCCGGTG
  CTCCCAAGGC GTGCAGTAGT TGTACTTAGC TGGTCCTGGG GCAGCAGCGG GAAGGGACTG
  AAGAGGGGTG CTGAGGTGAA AGATTGGAAG ACCCGGAAAG ATCAGCTAGA TTTCGGAAAC
  Y
  AGAAACACCC TCGGGGAGAC CTGGGGCTCC CGGCGCGCGA CGATTTCCTC GCACTAGCTG
  GGAGAGCGTT GATCCCATGG CCAGGATTCC GAGGTGCGAT TTTCTCCGGC CCCCCGGAAT
  CTACTATCTT ATTACTTCCT TGCTCGCTGG ACTGTTCTTA CCACCGGCTA TCGCCTTCAA
  TCTGGATGTG ATGGGTGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536813	CHEV_10_128370968	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217689971					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128769781 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	within coordinates
Gm67752	predicted gene, 67752	1893 bp downstream
Itga7	integrin alpha 7	mRNA-UTR
Rr441374	regulatory region 441374	82 bp distal
Rr441375	regulatory region 441375	1406 bp proximal
Rr441376	regulatory region 441376	1676 bp proximal
Tssr96480	transcription start site region 96480	149 bp downstream
Tssr96481	transcription start site region 96481	131 bp downstream
Tssr96482	transcription start site region 96482	84 bp downstream