rs217696453 SNP Detail

Summary

• ID
  rs217696453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:66684770 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTGAAAC AAGGAAGGCA
  AAGGCTGGTA GGAGGGCAGG TTCCTGTTTT CTCTAACCGT GCAATGCAGA CTTCTCTCTA
  CAAGGACGAT GGGGAAGAAA AGGGACATAT TAATTCCTTT ACAAAGCACT TGAGAATATA
  GCCAGCTTGA TGGCAAATGG CCAGAGCTTA TAGAAACACA CTCTTTTTCC CTCTCTTTTT
  Y
  TAATTAAAAG GCAGATGAAA CTGACAATTT GCCCGTTTGT GTCCCCAGAG CTTACTGGTC
  CCAAGGAGGC TGAGGATAGC TCACTGCAGC TTTTCTTTGC CAGAGTTCCT TCATTTTTGC
  AGCTCTCTTG TGTCACTACA GAAGGAACCC AGAGGAGTCC CTGAAACTGT GCTCTGCTAC
  AGGCCAGTTT CAGTTTCCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394379541	MGP_WTSI_15_66644483	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217696453					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394379541	MGP_WTSI_15_66644483	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:66684770 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr369944	regulatory region 369944			1019 bp upstream
Rr503567	regulatory region 503567			1947 bp distal
Rr503568	regulatory region 503568			1155 bp distal
Rr503569	regulatory region 503569			339 bp distal
Rr503570	regulatory region 503570			within coordinates
Rr503571	regulatory region 503571			1163 bp proximal
Rr503572	regulatory region 503572			1209 bp proximal
Sla	src-like adaptor			Intron
Tg	thyroglobulin			Intron
				Noncoding-Transcript-Variant
Tssr131484	transcription start site region 131484			677 bp downstream
Tssr131485	transcription start site region 131485			543 bp downstream
Tssr134585	transcription start site region 134585			818 bp upstream
Tssr134586	transcription start site region 134586			786 bp upstream
Tssr134587	transcription start site region 134587			707 bp upstream
Tssr134588	transcription start site region 134588			272 bp upstream
Tssr134589	transcription start site region 134589			241 bp upstream
Tssr134590	transcription start site region 134590			211 bp upstream
Tssr134591	transcription start site region 134591			189 bp upstream
Tssr134592	transcription start site region 134592			276 bp downstream