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rs217696650 SNP Detail
Summary
  • ID
    rs217696650
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr8:75824984 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AGGATCTCTG AGTTCCAGGT
    CAGCCTGCTT TACACAGCTA GTTCTAGGAC AGCCAAGGCT ACACAAAGAA ACCCTGTCTT
    AAAGAAACAA AACAAAACTC CAAGAAAAGA GATTAGACAA AGGCCCAGCT GAGAACTGGG
    TCTCCATCCT CATCCCTGGT CGATCTCAAG CAAGCCCTAC TCCAGGAGTT GTGGTTTCCT
    Y
    ACCTGCAAAA GCACATTAGC AAACTCCATG GCACATGGCT TAGCAAGGAG GAACTCACCA
    ATGCACAGTC AAGAAGAGAG AACAGGCTGT AGGCTGCACA GCAGCCATAC ATTATGTGTT
    ATTTCAGAGG AACAAACTAG TTCTCCTCAT AGGGACACAA ATAAGATCCT GAAGTCCTGA
    TTCAGGACAG TGTTACTGGT                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss375182954 MGP_WTSI_8_77622255 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217696650 SNP C C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss375182954 MGP_WTSI_8_77622255 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr8:75824984 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Hmox1 heme oxygenase 1 within coordinates
Tssr78049 transcription start site region 78049 1480 bp downstream
Tssr78050 transcription start site region 78050 1453 bp downstream
Tssr78051 transcription start site region 78051 1418 bp downstream
Tssr78052 transcription start site region 78052 1338 bp downstream
Tssr78053 transcription start site region 78053 1279 bp downstream
Tssr78054 transcription start site region 78054 1253 bp downstream
Tssr78055 transcription start site region 78055 1215 bp downstream
Tssr78056 transcription start site region 78056 1184 bp downstream
Tssr78057 transcription start site region 78057 1142 bp downstream
Tssr78058 transcription start site region 78058 1132 bp downstream
Tssr78059 transcription start site region 78059 1125 bp downstream
Tssr78060 transcription start site region 78060 1111 bp downstream
Tssr78061 transcription start site region 78061 1038 bp downstream
Tssr78062 transcription start site region 78062 401 bp upstream
Tssr78063 transcription start site region 78063 1521 bp upstream
Tssr78064 transcription start site region 78064 1551 bp upstream
Tssr78065 transcription start site region 78065 1600 bp upstream
Tssr78066 transcription start site region 78066 1650 bp upstream
Tssr78067 transcription start site region 78067 1680 bp upstream
Tssr78068 transcription start site region 78068 1719 bp upstream
Tssr78069 transcription start site region 78069 1764 bp upstream
Tssr78070 transcription start site region 78070 1813 bp upstream
Tssr78071 transcription start site region 78071 1862 bp upstream
Tssr78072 transcription start site region 78072 1883 bp upstream
Tssr78073 transcription start site region 78073 1944 bp upstream
Tssr78074 transcription start site region 78074 1996 bp upstream
Tssr81818 transcription start site region 81818 1424 bp upstream
Tssr81819 transcription start site region 81819 477 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory

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