rs217718906 SNP Detail

Summary

• ID
  rs217718906
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105721171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAAGCCAT AGAAATGAAA
  TCTAGTAAAA AAAAAATCGA AGAATAATTA GCAAAGAGTC TTGATTTAAA ACAGACACAG
  GATTGTGGTC TCCTTTCATG GCAGCCTGCT TACCCAGCTG TTCTCCTTGC CTTTTCATCA
  TAGCTACCAA GTCCTGGAGT GCAGGATCAG TCATGGCTGC TTTCAGGGCA AGTGCTTGGT
  R
  GCACTAAGCA CTCAGCTTGC CCATGGTGCT GACAGTGACA TCTTCGCAGA GGGCAGCATC
  CATCAGTTGT TCCCTCCTGC TGCTAGCTCC CTTTAGAAGC CTTTCATTTG AGTTTCTCAT
  TTTTAAGATA GTGGGAGGGT AATGGTGATT CGTTTTGATT TCCTCTCACT AACCAAAGCT
  TTTGTATCTG AATCCTGCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863268	CHEV_3_105616773	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217718906					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105721171 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	1712 bp upstream
Rr582787	regulatory region 582787	1220 bp proximal
Rr582788	regulatory region 582788	1735 bp proximal
Tssr31084	transcription start site region 31084	1675 bp upstream