rs217720928 SNP Detail

Summary

• ID
  rs217720928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81913535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTCAGATTG TGCTGGAGAA
  AGAGGAGACA GAGGAGCTGA AGCGGTTTGA TGAGCCAGGT TTGATCCTCA TGGGCTTTAA
  GCCCACGGTG ATGCTGAAGA AGCAGCACTA CCTGAGGCCC TCTCTGTTCG TGTACCCGGA
  GGAGTCCCTG GTCAGTGGTG AGTGCCGAGA CTCCCTGCTC AGATCCCTGG GAAAGGGTCA
  R
  AGTGTAGACA CCCTATTTTG GGGGACGTCC CTGGTAAATG GTTGTTCAAG GGACAGCCAG
  CGCCTGTCAC TGGGTTTGTT GGGCTGTGTT TCCTAAATGG CTGAGATACC TACAAGAGAT
  GCAGCTGGAG TAAAAAGAAG GAGGAGGAAA AAAGAAAGAA AACCTGTAAG ACTGTGCTGG
  GCGTGAGGGG AGAAGGAGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325033197	CHEV_15_81859764	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217720928					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81913535 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	1192 bp distal
Rr506382	regulatory region 506382	1227 bp proximal
Tssr132336	transcription start site region 132336	1288 bp downstream
Tssr132337	transcription start site region 132337	1259 bp downstream
Tssr132338	transcription start site region 132338	1240 bp downstream
Tssr132339	transcription start site region 132339	1201 bp downstream
Tssr132340	transcription start site region 132340	822 bp downstream
Tssr132341	transcription start site region 132341	121 bp downstream
Tssr135523	transcription start site region 135523	1474 bp upstream
Tssr135524	transcription start site region 135524	252 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates