rs217723357 SNP Detail

Summary

• ID
  rs217723357
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53189563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAAACAAA GACTACTCAT AATACCTAGC
  TTAAAAAGGA CAAATGGGAA GAGAGCTTGG TACTGGGGTG GGAAGGGACG TTGAAAACTG
  ACTCTGATAA TGGTACCAGA GCTCTGTGGC ACCAAACTCG AGAATTGGGT GCCAGGCAAt
  R
  gcttacttgg tagagtgctt gttttgtatg catgaagccc tggcttcaag cccccactgt
  acagcaaact gggtgttgtg cctgcacacc tgtacacttg ggagatgaag ggaggaggat
  taagagtcat tcccagacac aaagttattt                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323672241	CHEV_11_53112238	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217723357					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53189563 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2859	CpG island 2859	857 bp proximal
Hspa4	heat shock protein 4	within coordinates
Rr369205	regulatory region 369205	1677 bp upstream
Rr446993	regulatory region 446993	612 bp proximal
Rr446994	regulatory region 446994	1711 bp proximal
Tssr101379	transcription start site region 101379	1119 bp upstream
Tssr101380	transcription start site region 101380	1148 bp upstream
Tssr107908	transcription start site region 107908	1441 bp downstream
Tssr107909	transcription start site region 107909	1451 bp downstream
Tssr107910	transcription start site region 107910	1463 bp downstream
Tssr107911	transcription start site region 107911	1596 bp downstream
Tssr107912	transcription start site region 107912	1637 bp downstream
Tssr107913	transcription start site region 107913	1794 bp downstream
Tssr107914	transcription start site region 107914	1950 bp downstream