rs217725304 SNP Detail

Summary

• ID
  rs217725304
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164328152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCCTTGCC GGCGTGTAGG
  GTGCGGCGCA TCCCCTCCAG CCCTGACTCG CCCAGTGCGC TGACCCGTAG GGCGACGGCT
  CTGTGTGGTC CTTAGGCCAG CTGAGGGAAT CCAAGGTCCA TGCACTTGAC TCGCTGGGCA
  GCAGCTGACC CTGCTTCCCC ATCTCGCACC TTCTGGAGAA GTGTGCGCGT AACCGTGGCC
  R
  GGGTGATCGA GGTGCGGTGA GGCGGGCAGC GAGCGCGTGC GCGTGGTCGT TGCGTGGGCG
  CTGCTCTGGA GTCGGAGAGC ATCAAGTGTG CGTGGGCCGG AGCCGGCGCG TGTGCCCGCA
  GCAGCTGTGC GCCGGGCGGG GGTGCCGCAA GTGCCTCGGG GTGCGCGCAG CCTCGCGCGG
  GCGGAGCGAG GAGGGATGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356433156	MGP_WTSI_2_164311732	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217725304					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356433156	MGP_WTSI_2_164311732	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164328152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12662	CpG island 12662	within coordinates
Dbndd2	dysbindin domain containing 2	within coordinates
Gm10725	predicted gene 10725	within coordinates
Gm20458	predicted gene 20458	within coordinates
Rr569631	regulatory region 569631	within coordinates
Rr569632	regulatory region 569632	656 bp proximal
Rr569633	regulatory region 569633	1692 bp proximal
Tssr21598	transcription start site region 21598	137 bp downstream
Tssr21599	transcription start site region 21599	287 bp upstream
Tssr21600	transcription start site region 21600	624 bp upstream
Tssr21601	transcription start site region 21601	1871 bp upstream
Tssr21602	transcription start site region 21602	1965 bp upstream