rs217744223 SNP Detail

Summary

• ID
  rs217744223
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75066430 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATAGTTAAT TCTCAATAAA TGTTATTTCT
  ACCTCTGGAC CTTATCCGCC TGGGCTGTAC ATAAATGTTA GAGCATTGAT TCCTCGGGGG
  GAGGGGGCTT CTTTTTCTCC CCAGAGGGTT TTGAGTCCCA CTAGAGGCTC TTTCCTAATA
  M
  CACATATTTA CCAGAGACTT AAAATTCTAC CCAAGACTGT AGTTTGCAAA TAGCTACATC
  AGGAATGACC AGGGGCAGAC AAATAGGTCT ATAGTTTTCT CTAGGAACTC CAGGTTTAAC
  AAGTGTTCCT TGTGTAGGTG GCCCCCAGGG                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323750386	CHEV_11_74989106	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217744223					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75066430 () rs orientation: forward

Symbol	Name	Function Class
1700016P03Rik	RIKEN cDNA 1700016P03 gene	112 bp downstream
Cpgi3254	CpG island 3254	1553 bp distal
Mir132	microRNA 132	1857 bp downstream
Mirc19	microRNA cluster 19, including Mir212 through Mir132	1857 bp distal
Ovca2	candidate tumor suppressor in ovarian cancer 2	339 bp downstream
Rr451079	regulatory region 451079	1891 bp distal
Rr451080	regulatory region 451080	1297 bp distal