rs217751684 SNP Detail

Summary

• ID
  rs217751684
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:85275123 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGAAAAC GTGGTTTTGT TATTGTTACG AAATAAATGA
  TTCATATGCT GTATATAGCT GTTATAGAAG TGGCGATTAG TGTAATTAGT AGGGCTCAGG
  Y
  GTTGGTGTTG CAGGTATTAA TTGCTTCAAT AATTAGGTCT TTTGAGTAGA ATCCTGTTAG
  GAATGGCATT CCTGTGAGGG CGAGGCTTCC GATTACTAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324460057	CHEV_13_85266609	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217751684					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:85275123 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5915	CpG island 5915	within coordinates
Gm4076	predicted gene 4076	within coordinates
Rr388812	regulatory region 388812	9 bp upstream
Rr483357	regulatory region 483357	within coordinates
Tssr4134	transcription start site region 4134	122 bp downstream
Tssr120547	transcription start site region 120547	414 bp downstream
Tssr120548	transcription start site region 120548	302 bp downstream
Tssr120549	transcription start site region 120549	235 bp downstream
Tssr123349	transcription start site region 123349	365 bp upstream
Tssr123350	transcription start site region 123350	within coordinates
Tssr123351	transcription start site region 123351	83 bp downstream
Tssr123352	transcription start site region 123352	389 bp downstream