rs217761172 SNP Detail

Summary

• ID
  rs217761172
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:47450316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTATTTTC CACACAGTAC
  ACGTTATTAT CAATCTTAAA ACGCCAAGTC TCTCTTCCTT TAGGTCAGAA ACTTTCTTTG
  TCAGAGTCTC GCCAACAGTT AGCTAATATT TGATGAGCAC TCACTATGTA CCCAGAACTG
  GGCTAAGTCC TTCCCAGGGG TGATGTCATT TAAGTCTCTT GACAGCCCTA TGAAGTACAC
  R
  CTATTATTAC CCTCACTTTA AAAGTGAGGA ACTAGAGCCT GAGAGATGGC TCAGGGGTTA
  TAAGCACTGG CAGCTCTTCC AGGGGACCCC GGTTCAATTC TCAGCACCCA CCCAATCGTT
  CACACCTGTC TGTAATTCTA GCTCCAGGGA AACCTACACC CTCTCCTGGC TTTCTGCAGG
  TACTGCATGC AAGTGGAGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325826245	CHEV_19_47536367	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217761172					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:47450316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11031	CpG island 11031	1522 bp proximal
Rr549061	regulatory region 549061	933 bp distal
Rr549062	regulatory region 549062	1023 bp distal
Rr549063	regulatory region 549063	within coordinates
Rr549064	regulatory region 549064	153 bp proximal
Rr549065	regulatory region 549065	1290 bp proximal
Sh3pxd2a	SH3 and PX domains 2A	within coordinates
Tssr159729	transcription start site region 159729	1254 bp upstream
Tssr159730	transcription start site region 159730	1110 bp upstream