rs217761855 SNP Detail

Summary

• ID
  rs217761855
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142207480 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATGTGAA TATATAATTT
  GGGGGGTGTC AATTGGGTTG TTTAGAGCCA ATCAAATTTG GTTTTTTAGA ACTGCTGAGA
  TCCCCTTGCC CGATGGTGTG GGGCAAGGGG AACAGCCTGA TGTGGGGAGG CGGGGCATGG
  GGGTGGGTAA GGAGAAACCT GGGGAGGGAG TGGAGCAGAG AGATCTTAGT GTGGGACGTG
  R
  TGGAACTGTC CCTGCTCAAG AGGAGGTCAC AGATTGATGG TACTACATTG CAGAATTACC
  ACATAATTTG ATTCACTGAT GGTTGCTGGA CATCTCCGAA GAGGCTCCCC CGTGGGCGGG
  GTCTTTGGGT GGTAACACGA TCAGGGGACG ATGACGTTTG GCCTCTCTGA ACTCTTTGAG
  CTCTTTGGCA AGCATGCGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373454560	MGP_WTSI_7_149839648	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217761855					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373454560	MGP_WTSI_7_149839648	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142207480 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19966	CpG island 19966	542 bp proximal
D7Mit46	DNA segment, Chr 7, Massachusetts Institute of Technology 46	648 bp distal
Gm49394	predicted gene, 49394	within coordinates
Igf2	insulin-like growth factor 2	within coordinates
Mir483	microRNA 483	1181 bp downstream
Rr167001	regulatory region 167001	within coordinates
Tssr2462	transcription start site region 2462	686 bp downstream
Tssr2463	transcription start site region 2463	101 bp downstream
Tssr70229	transcription start site region 70229	726 bp downstream
Tssr70230	transcription start site region 70230	633 bp downstream
Tssr70231	transcription start site region 70231	178 bp downstream
Tssr70232	transcription start site region 70232	125 bp downstream
Tssr70233	transcription start site region 70233	82 bp downstream
Tssr70234	transcription start site region 70234	44 bp downstream
Tssr70235	transcription start site region 70235	21 bp downstream
Tssr70236	transcription start site region 70236	within coordinates
Tssr70237	transcription start site region 70237	86 bp upstream
Tssr70238	transcription start site region 70238	105 bp upstream
Tssr70239	transcription start site region 70239	249 bp upstream
Tssr70240	transcription start site region 70240	570 bp upstream
Tssr75854	transcription start site region 75854	1701 bp upstream
Tssr75855	transcription start site region 75855	1517 bp upstream
Tssr75856	transcription start site region 75856	1478 bp upstream
Tssr75857	transcription start site region 75857	1463 bp upstream
Tssr75858	transcription start site region 75858	1425 bp upstream
Tssr75859	transcription start site region 75859	1369 bp upstream
Tssr75860	transcription start site region 75860	1314 bp upstream
Tssr75861	transcription start site region 75861	1282 bp upstream
Tssr75862	transcription start site region 75862	735 bp upstream
Tssr75863	transcription start site region 75863	704 bp upstream
Tssr75864	transcription start site region 75864	675 bp upstream
Tssr75865	transcription start site region 75865	642 bp upstream
Tssr75866	transcription start site region 75866	595 bp upstream
Tssr75867	transcription start site region 75867	562 bp upstream
Tssr75868	transcription start site region 75868	543 bp upstream
Tssr75869	transcription start site region 75869	521 bp upstream
Tssr75870	transcription start site region 75870	508 bp upstream
Tssr75871	transcription start site region 75871	464 bp upstream
Tssr75872	transcription start site region 75872	56 bp upstream
Tssr75873	transcription start site region 75873	44 bp upstream
Tssr75874	transcription start site region 75874	154 bp downstream
Tssr75875	transcription start site region 75875	191 bp downstream
Tssr75876	transcription start site region 75876	223 bp downstream
Tssr75877	transcription start site region 75877	299 bp downstream
Tssr75878	transcription start site region 75878	575 bp downstream
Tssr75879	transcription start site region 75879	597 bp downstream
Tssr75880	transcription start site region 75880	647 bp downstream
Tssr75881	transcription start site region 75881	1941 bp downstream
Tssr75882	transcription start site region 75882	1982 bp downstream