rs217777225 SNP Detail

Summary

• ID
  rs217777225
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:97023009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCCTGGTT GGATGCTGGT
  GTCCTAGTGT TGGGGCAACC TATGGTCTTC GGCTCACTTG ACATTATGTT TCATCTCTGA
  GGGCAGACAG CCAGGTGGCC TTGGTTCTGG CTTCTCTTAG GGGGAGTCCC TTGTCCCTGT
  AACCCAAAGA TTCTTCTCTA GGTCTTGGGG CCAGGCTGAT TTCCTCTGTT GTGGGGTATC
  Y
  ACCAGAGAAG ACTGCTCCAA TGTGGACTTA AGCCAATGGA AAGTCTTTAT TAGCCAACCA
  GTGATTACAC TGGATGTTCA GGATTCCAGT GTAGCCCCAA GCCTTTCTCA GGGTGAGCTT
  TTAAGCACAT AAACTATGTC CTGGGTTGAC ATACTTCAGT TAACAAGAAT AGTTAGCCAG
  ATGCAGAACT ATGGAAGCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323116072	CHEV_9_97041375	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217777225					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:97023009 () rs orientation: forward

Symbol	Name	Function Class
Gm57041	predicted gene, 57041	127 bp upstream
Rr685156	regulatory region 685156	within coordinates
Tssr86631	transcription start site region 86631	157 bp upstream