rs217779864 SNP Detail

Summary

• ID
  rs217779864
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:153568469 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAAGCCA GCTCTCAGCT
  CCACACATAG TGGGGAAGAA ATGCAAAGCC AGGGGCCTTA GAAATGAGCT TCAGTCTGCG
  GTCTTCCTGC TTGGACTTTA GAGTCAGAGC CGGGAAGGTA AAGAGAGGCA ACTGGGGACT
  TGCCAGGGTG CTGCAAGCAA GTGACTTCAG CCCAGCAGTT GCCCCCCTCA GGAGAGAGAG
  R
  GTGAGGCCTC CCTGGGAGGG TTGCTGGGGG GGGGGGAGGA GCCAGTCTTC CTGGGATTCA
  CTGTGCACCC AGGCAGGTCC TTTTCCCTGA GCCTCCAGTC CAAGGTTTTT GGCAGCCAGA
  GATTCTCCCC ACCCAGGCTG GACAGGACAA CATGGTTCTG TTTTCCCTCT CAGGCCCTAA
  AGAAAGTATC TGGGAGCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363742906	MGP_WTSI_4_152858121	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217779864					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363742906	MGP_WTSI_4_152858121	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:153568469 () rs orientation: forward

Symbol	Name	Function Class
Ajap1	adherens junction associated protein 1	1201 bp upstream
Cpgi15423	CpG island 15423	365 bp distal
Gm69122	predicted gene, 69122	within coordinates
Rr605998	regulatory region 605998	1212 bp distal
Rr605999	regulatory region 605999	923 bp distal
Rr606000	regulatory region 606000	within coordinates
Rr606001	regulatory region 606001	584 bp proximal
Tssr44844	transcription start site region 44844	1225 bp upstream
Tssr44845	transcription start site region 44845	1040 bp upstream
Tssr44846	transcription start site region 44846	37 bp upstream