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rs217779884 SNP Detail
Summary
  • ID
    rs217779884
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44126950 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTGCTCCTC TTGTATCTCC
CTCATCTCAT CCTCCTTGTC CCCCTCCTTC TTCTCCATTT TCTTTTCTTC CTTCCTCTCC
AACTCTTTCC TCTTCTTCAT CTCTTCTTCC TCCTTTTCAC CTCCTTTCTC CATCTTCCCT
TGCTCCCTAT TTTTTCTATC CTTCCATTTT CTTCCTTCAT CTCTTCCATC TTTTCTTCCT
Y
TATCTTTCTT CTCCTCCCCT TCTATTTTTT CTCTTCTATT TTCTCCTCAT CATCGTCCTA
TTTCATTTCC TCTTCCTCAT CCTTCATACC TTCCTCCTGT ATCTCCTGTT CATCCTTCTA
CATTTCCTCT TCGTATCTAT TTCCTCCTCC TCCTCAATCT CCTACCTATA CTTCATCTCC
TCTTTCTCTA TCTCCTCCTA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156085 MGP_WTSI_7_51732896 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217779884 SNP C C C C C C C C C C C C C C C C C C T C C C C C C C C C C C C T C C C C C C C C C C C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156085 MGP_WTSI_7_51732896 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44126950 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Rr646102 regulatory region 646102 1867 bp distal
Tssr2222 transcription start site region 2222 1172 bp downstream
Tssr2223 transcription start site region 2223 993 bp downstream
Tssr2224 transcription start site region 2224 147 bp downstream
Tssr2225 transcription start site region 2225 107 bp downstream
Tssr2226 transcription start site region 2226 412 bp upstream
Tssr2227 transcription start site region 2227 1485 bp upstream
Tssr66192 transcription start site region 66192 1987 bp downstream
Tssr66193 transcription start site region 66193 1915 bp downstream
Tssr66194 transcription start site region 66194 1823 bp downstream
Tssr66195 transcription start site region 66195 1772 bp downstream
Tssr66196 transcription start site region 66196 1739 bp downstream
Tssr66197 transcription start site region 66197 1594 bp downstream
Tssr66198 transcription start site region 66198 1563 bp downstream
Tssr66199 transcription start site region 66199 1553 bp downstream
Tssr66200 transcription start site region 66200 1530 bp downstream
Tssr66201 transcription start site region 66201 1512 bp downstream
Tssr66202 transcription start site region 66202 1497 bp downstream
Tssr66203 transcription start site region 66203 1475 bp downstream
Tssr66204 transcription start site region 66204 1419 bp downstream
Tssr66205 transcription start site region 66205 1395 bp downstream
Tssr66206 transcription start site region 66206 1382 bp downstream
Tssr66207 transcription start site region 66207 1362 bp downstream
Tssr66208 transcription start site region 66208 1348 bp downstream
Tssr66209 transcription start site region 66209 1317 bp downstream
Tssr66210 transcription start site region 66210 1284 bp downstream
Tssr66211 transcription start site region 66211 1244 bp downstream
Tssr66212 transcription start site region 66212 1201 bp downstream
Tssr66213 transcription start site region 66213 1186 bp downstream
Tssr66214 transcription start site region 66214 1154 bp downstream
Tssr66215 transcription start site region 66215 1124 bp downstream
Tssr66216 transcription start site region 66216 1077 bp downstream
Tssr66217 transcription start site region 66217 1005 bp downstream
Tssr66218 transcription start site region 66218 951 bp downstream
Tssr66219 transcription start site region 66219 909 bp downstream
Tssr66220 transcription start site region 66220 875 bp downstream
Tssr66221 transcription start site region 66221 856 bp downstream
Tssr66222 transcription start site region 66222 803 bp downstream
Tssr66223 transcription start site region 66223 736 bp downstream
Tssr66224 transcription start site region 66224 713 bp downstream
Tssr66225 transcription start site region 66225 693 bp downstream
Tssr66226 transcription start site region 66226 680 bp downstream
Tssr66227 transcription start site region 66227 639 bp downstream
Tssr66228 transcription start site region 66228 636 bp downstream
Tssr66229 transcription start site region 66229 623 bp downstream
Tssr66230 transcription start site region 66230 603 bp downstream
Tssr66231 transcription start site region 66231 568 bp downstream
Tssr66232 transcription start site region 66232 556 bp downstream
Tssr66233 transcription start site region 66233 534 bp downstream
Tssr66234 transcription start site region 66234 504 bp downstream
Tssr66235 transcription start site region 66235 484 bp downstream
Tssr66236 transcription start site region 66236 457 bp downstream
Tssr66237 transcription start site region 66237 436 bp downstream
Tssr66238 transcription start site region 66238 417 bp downstream
Tssr66239 transcription start site region 66239 366 bp downstream
Tssr66240 transcription start site region 66240 285 bp downstream
Tssr66241 transcription start site region 66241 273 bp downstream
Tssr66242 transcription start site region 66242 193 bp downstream
Tssr66243 transcription start site region 66243 179 bp downstream
Tssr66244 transcription start site region 66244 128 bp downstream
Tssr66245 transcription start site region 66245 66 bp downstream
Tssr66246 transcription start site region 66246 38 bp downstream
Tssr66247 transcription start site region 66247 within coordinates
Tssr66248 transcription start site region 66248 28 bp upstream
Tssr66249 transcription start site region 66249 52 bp upstream
Tssr66250 transcription start site region 66250 83 bp upstream
Tssr66251 transcription start site region 66251 93 bp upstream
Tssr66252 transcription start site region 66252 127 bp upstream
Tssr66253 transcription start site region 66253 150 bp upstream
Tssr66254 transcription start site region 66254 180 bp upstream
Tssr66255 transcription start site region 66255 240 bp upstream
Tssr66256 transcription start site region 66256 268 bp upstream
Tssr66257 transcription start site region 66257 304 bp upstream
Tssr66258 transcription start site region 66258 334 bp upstream
Tssr66259 transcription start site region 66259 363 bp upstream
Tssr66260 transcription start site region 66260 479 bp upstream
Tssr66261 transcription start site region 66261 505 bp upstream
Tssr66262 transcription start site region 66262 522 bp upstream
Tssr66263 transcription start site region 66263 528 bp upstream
Tssr66264 transcription start site region 66264 538 bp upstream
Tssr66265 transcription start site region 66265 567 bp upstream
Tssr66266 transcription start site region 66266 610 bp upstream
Tssr66267 transcription start site region 66267 638 bp upstream
Tssr66268 transcription start site region 66268 667 bp upstream
Tssr66269 transcription start site region 66269 687 bp upstream
Tssr66270 transcription start site region 66270 738 bp upstream
Tssr66271 transcription start site region 66271 756 bp upstream
Tssr66272 transcription start site region 66272 822 bp upstream
Tssr66273 transcription start site region 66273 834 bp upstream
Tssr66274 transcription start site region 66274 849 bp upstream
Tssr66275 transcription start site region 66275 857 bp upstream
Tssr66276 transcription start site region 66276 886 bp upstream
Tssr66277 transcription start site region 66277 894 bp upstream
Tssr66278 transcription start site region 66278 926 bp upstream
Tssr66279 transcription start site region 66279 973 bp upstream
Tssr66280 transcription start site region 66280 1012 bp upstream
Tssr66281 transcription start site region 66281 1043 bp upstream
Tssr66282 transcription start site region 66282 1069 bp upstream
Tssr66283 transcription start site region 66283 1083 bp upstream
Tssr66284 transcription start site region 66284 1100 bp upstream
Tssr66285 transcription start site region 66285 1115 bp upstream
Tssr66286 transcription start site region 66286 1152 bp upstream
Tssr66287 transcription start site region 66287 1170 bp upstream
Tssr66288 transcription start site region 66288 1206 bp upstream
Tssr66289 transcription start site region 66289 1254 bp upstream
Tssr66290 transcription start site region 66290 1315 bp upstream
Tssr66291 transcription start site region 66291 1344 bp upstream
Tssr66292 transcription start site region 66292 1382 bp upstream
Tssr66293 transcription start site region 66293 1400 bp upstream
Tssr66294 transcription start site region 66294 1421 bp upstream
Tssr66295 transcription start site region 66295 1706 bp upstream
Tssr66296 transcription start site region 66296 1839 bp upstream
Tssr66297 transcription start site region 66297 1882 bp upstream
Tssr66298 transcription start site region 66298 1907 bp upstream
Tssr66299 transcription start site region 66299 1976 bp upstream
Tssr66300 transcription start site region 66300 1983 bp upstream
Tssr72198 transcription start site region 72198 1742 bp upstream
Tssr72199 transcription start site region 72199 43 bp upstream
Tssr72200 transcription start site region 72200 903 bp downstream
Tssr72201 transcription start site region 72201 1404 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory