rs217780476 SNP Detail

Summary

• ID
  rs217780476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43353658 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAACTAAT GAAACGCAAC
  GTCTCCTTTT ATAATTCTAA CTGTCACATT AAATTGAAGG TGAGGACAAA ACTGCAGCAT
  CTGTTAACGC AGCCGAGGGA AGAGTTGTGC TGCGCATGTC ACTTAATGCA CAAGTGCAGA
  AGTCAAGTTC CCTAACGAAT CCAAGTGCTT CCACTTTGTC TCCAGGGAAT GTATAAATTA
  R
  CCATTCCCCC TCCCTTCCTC CCTCCTCCCT ATTTTAAATG TAGATAGGGC GACCCTAGCC
  TTTTGAATTT GAAGGGCTGC TATCTCGGGC CCATTCTTTC CATCATCCTG TTTTGAATGA
  CACTGAGCAC GTATAGATTC TCTTATAAAA GCACCCCTAG GATGCTGGGC TCCTTTCTTC
  AAGCTGCTAG CTAATTTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380192134	MGP_WTSI_10_43197468	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217780476					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380192134	MGP_WTSI_10_43197468	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43353658 () rs orientation: forward

Symbol	Name	Function Class
Bend3	BEN domain containing 3	1472 bp upstream
Cpgi1500	CpG island 1500	693 bp proximal
Rr214905	regulatory region 214905	1858 bp distal
Rr224738	regulatory region 224738	within coordinates
Rr227663	regulatory region 227663	1852 bp distal
Rr384594	regulatory region 384594	within coordinates
Tssr93131	transcription start site region 93131	960 bp upstream
Tssr93132	transcription start site region 93132	1150 bp upstream
Tssr93133	transcription start site region 93133	1479 bp upstream
Tssr93134	transcription start site region 93134	1539 bp upstream
Tssr93135	transcription start site region 93135	1620 bp upstream
Tssr93136	transcription start site region 93136	1682 bp upstream