rs217783275 SNP Detail

Summary

• ID
  rs217783275
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:23924248 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACAGCG ATGGAGTTGT
  GGGTTGAACT GCGTCACAAC CTTTTGTCAG CCATTTTTTT TTCAAGTTTT TTACCATTAC
  CAATTACACT TGCTTTGCCT TATTTTGATC AGCATAGTTG TAGATTAACT TTGTTTTGCC
  TCAGCTTCCC GAAGCGCTTG CTTTATACGT GTGTGTCGTC ACTGAAGATT GACCTTGTAT
  R
  AATACTGAGG TTTCTTGGTA ATGCTTTGTA CAATCCAAAA TGTTAAATTG GCTATCTGTT
  GAAAGTGTAT GCTTCTAATA AAAAGCGTTT AGTTTTCATT CACTGTTGGA CTCTTTCATA
  CCCACAGTCT TTGAGAGATT CAGATTGCTG ATTTGTTGCA GCCTGGATCA TATTTCTGGT
  GTACCCTATA GTGAGATGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387989019	MGP_WTSI_13_23832134	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217783275					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387989019	MGP_WTSI_13_23832134	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23924248 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5372	CpG island 5372	203 bp distal
H1f2	H1.2 linker histone, cluster member	mRNA-UTR
Rr369656	regulatory region 369656	within coordinates
Rr388130	regulatory region 388130	1391 bp upstream
Rr475930	regulatory region 475930	1447 bp distal
Rr475931	regulatory region 475931	1079 bp distal
Rr475932	regulatory region 475932	1546 bp proximal
Tssr118854	transcription start site region 118854	1456 bp downstream
Tssr118855	transcription start site region 118855	1067 bp downstream
Tssr118856	transcription start site region 118856	330 bp downstream
Tssr118857	transcription start site region 118857	90 bp downstream