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rs217791837 SNP Detail
Summary
  • ID
    rs217791837
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr5:135040016 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GACCTTCAGG GCCTCCTTCC
    ACAGCTGGGT CTGGTGCCCT GCGTCCTCGT TGGCCACAGC ATGGGAGGAA AGACAGCCAT
    GCTCCTGGCA CTGCAGAGGG TAAGCTACAC CTATCTGGGT CCTCTTAATG CACTCTAAGC
    CCATTGATAA CGTGGGACTC ATCCACACTT TGGATGGCCA GGTCCAGAAA CTCTGCTGGC
    R
    GCTCAGAGTT TGTCTGGGAC CTGCTCTGGT CTGATTCTGT CTCCCAGCCA GATGTTGTGG
    AACGATTGGT TGTTGTAGAC ATAAGCCCGG TAGGAACCAC ACCTGGATCA CACATTGGAG
    CCTTCATAGC AGCCATGAAG GCTGTTGAGA TCCCAGAGAA GGTGCCGCAC TCCCAAGCCC
    GAAAACTGGC GGATAAGCAG                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss366824579 MGP_WTSI_5_135487032 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs217791837 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G A G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss366824579 MGP_WTSI_5_135487032 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:135040016 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Abhd11 abhydrolase domain containing 11 within coordinates
Abhd11os abhydrolase domain containing 11, opposite strand 1024 bp downstream
Cpgi16736 CpG island 16736 988 bp distal
Gm43372 predicted gene 43372 1054 bp upstream
Gm73578 predicted gene, 73578 825 bp downstream
Rr110217 regulatory region 110217 1585 bp proximal
Rr110218 regulatory region 110218 1985 bp proximal
Rr124503 regulatory region 124503 15 bp distal
Rr124504 regulatory region 124504 584 bp proximal
Tssr1661 transcription start site region 1661 1130 bp downstream
Tssr1662 transcription start site region 1662 1565 bp downstream
Tssr1663 transcription start site region 1663 1997 bp downstream
Tssr49120 transcription start site region 49120 1845 bp downstream
Tssr49121 transcription start site region 49121 1709 bp downstream
Tssr49122 transcription start site region 49122 1463 bp downstream
Tssr49123 transcription start site region 49123 1436 bp downstream
Tssr49124 transcription start site region 49124 1397 bp downstream
Tssr49125 transcription start site region 49125 1386 bp downstream
Tssr49126 transcription start site region 49126 1317 bp downstream
Tssr49127 transcription start site region 49127 1261 bp downstream
Tssr49128 transcription start site region 49128 1148 bp downstream
Tssr53717 transcription start site region 53717 1584 bp downstream
Tssr53718 transcription start site region 53718 1600 bp downstream
Tssr53719 transcription start site region 53719 1650 bp downstream
Tssr53720 transcription start site region 53720 1695 bp downstream
Tssr53721 transcription start site region 53721 1952 bp downstream
Tssr53722 transcription start site region 53722 1969 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory