rs217793542 SNP Detail

Summary

• ID
  rs217793542
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142131309 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTCT CTCTAAGAGC TCTTTCCACC
  Y
  GGGGTCGCCA ATGGTCCCCC AGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322471485	CHEV_7_149763477	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs217793542					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142131309 () rs orientation: forward

Symbol	Name	Function Class
Gm56420	predicted gene, 56420	649 bp downstream
Gm56421	predicted gene, 56421	277 bp upstream
H19	H19, imprinted maternally expressed transcript	within coordinates
Mir675	microRNA 675	425 bp upstream
Rr658231	regulatory region 658231	563 bp proximal
Rr658232	regulatory region 658232	1687 bp proximal
Tssr2460	transcription start site region 2460	312 bp downstream
Tssr2461	transcription start site region 2461	339 bp upstream
Tssr70213	transcription start site region 70213	1501 bp downstream
Tssr70214	transcription start site region 70214	919 bp downstream
Tssr70215	transcription start site region 70215	596 bp downstream
Tssr70216	transcription start site region 70216	532 bp downstream
Tssr70217	transcription start site region 70217	515 bp downstream
Tssr70218	transcription start site region 70218	165 bp downstream
Tssr70219	transcription start site region 70219	127 bp downstream
Tssr70220	transcription start site region 70220	15 bp downstream
Tssr70221	transcription start site region 70221	14 bp upstream
Tssr70222	transcription start site region 70222	29 bp upstream
Tssr70223	transcription start site region 70223	201 bp upstream
Tssr70224	transcription start site region 70224	258 bp upstream
Tssr70225	transcription start site region 70225	296 bp upstream
Tssr70226	transcription start site region 70226	393 bp upstream
Tssr70227	transcription start site region 70227	465 bp upstream
Tssr70228	transcription start site region 70228	488 bp upstream
Tssr75813	transcription start site region 75813	1995 bp upstream
Tssr75814	transcription start site region 75814	1943 bp upstream
Tssr75815	transcription start site region 75815	1779 bp upstream
Tssr75816	transcription start site region 75816	1718 bp upstream
Tssr75817	transcription start site region 75817	1555 bp upstream
Tssr75818	transcription start site region 75818	1479 bp upstream
Tssr75819	transcription start site region 75819	1309 bp upstream
Tssr75820	transcription start site region 75820	1258 bp upstream
Tssr75821	transcription start site region 75821	1245 bp upstream
Tssr75822	transcription start site region 75822	1084 bp upstream
Tssr75823	transcription start site region 75823	1041 bp upstream
Tssr75824	transcription start site region 75824	1008 bp upstream
Tssr75825	transcription start site region 75825	884 bp upstream
Tssr75826	transcription start site region 75826	836 bp upstream
Tssr75827	transcription start site region 75827	816 bp upstream
Tssr75828	transcription start site region 75828	684 bp upstream
Tssr75829	transcription start site region 75829	194 bp upstream
Tssr75830	transcription start site region 75830	167 bp upstream
Tssr75831	transcription start site region 75831	146 bp upstream
Tssr75832	transcription start site region 75832	80 bp upstream
Tssr75833	transcription start site region 75833	3 bp upstream
Tssr75834	transcription start site region 75834	258 bp downstream
Tssr75835	transcription start site region 75835	294 bp downstream
Tssr75836	transcription start site region 75836	316 bp downstream
Tssr75837	transcription start site region 75837	336 bp downstream
Tssr75838	transcription start site region 75838	413 bp downstream
Tssr75839	transcription start site region 75839	426 bp downstream
Tssr75840	transcription start site region 75840	468 bp downstream
Tssr75841	transcription start site region 75841	470 bp downstream
Tssr75842	transcription start site region 75842	507 bp downstream
Tssr75843	transcription start site region 75843	514 bp downstream
Tssr75844	transcription start site region 75844	521 bp downstream
Tssr75845	transcription start site region 75845	567 bp downstream