rs217796214 SNP Detail

Summary

• ID
  rs217796214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122525012 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTCACTGT ACACTCCCAT
  CCTCTGCTCC CTTTGAATTA GAGCACAGAA AATGGGGAGG GGCCAGAGAG CAGGGCTGAG
  TTTTAAAGTA TGCTTTGGAG ATGTTCTTTA GATGGGCTGT TGTTAACAGT TGAAAGCTAA
  AAATACAGCA AAAATGACCC GTTCTTTGTT TTACCCTCTC CGCTTTAAAG ACAAACTATG
  R
  ATAGCTTACT GGAGGTTTTT GAGTGGTCCT AGGCTAGGGC ACTGTTAAAC CTTCCAAAAA
  CCTTGAAAGA GTAGCAACAT TGTAGTTGAA AGTAAAAAAG AGTCCTTTGA TACATTTACT
  ATTAATTTTT CCCCCTCTCA AGTAGAAATT AAAATTACAA ATAAAAATAC AATTAAAGCC
  TCAATTACAA TGCTAACTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359508392	MGP_WTSI_3_122434281	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs217796214					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359508392	MGP_WTSI_3_122434281	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122525012 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13771	CpG island 13771	428 bp distal
Pde5a	phosphodiesterase 5A, cGMP-specific	within coordinates
Rr584394	regulatory region 584394	1783 bp distal
Rr584395	regulatory region 584395	39 bp distal
Rr584396	regulatory region 584396	880 bp distal
Tssr31514	transcription start site region 31514	1628 bp downstream
Tssr31515	transcription start site region 31515	1494 bp downstream
Tssr31516	transcription start site region 31516	1469 bp downstream
Tssr31517	transcription start site region 31517	1434 bp downstream
Tssr31518	transcription start site region 31518	1306 bp downstream
Tssr31519	transcription start site region 31519	1244 bp downstream
Tssr31520	transcription start site region 31520	1210 bp downstream
Tssr31521	transcription start site region 31521	1124 bp downstream
Tssr31522	transcription start site region 31522	1102 bp downstream